Locus 5805

Sequence ID X_DroMel_CAF1
Location 15,049,204 – 15,049,303
Length 99
Max. P 0.607834
window9419

overview

Window 9

Location 15,049,204 – 15,049,303
Length 99
Sequences 3
Columns 99
Reading direction forward
Mean pairwise identity 79.31
Mean single sequence MFE -24.80
Consensus MFE -15.47
Energy contribution -16.13
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -1.77
Structure conservation index 0.62
SVM decision value 0.15
SVM RNA-class probability 0.607834
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15049204 99 + 22224390
UUUACGCUGCCGCUUGCGGUUGCCUUACAUUUUAAUUGAGUUGCUUGUGCAGCUGGCAGCGCCAACAAAAAAAAAAGAAACAUUAGUUGUAUCUGUAUC
....(((((((((........))...............((((((....)))))))))))))..............(((.(((.....))).)))..... ( -26.40)
>DroEre_CAF1 4956 79 + 1
U-------------UGCGGUUGCCUUACAUUUUAAUUGAGUUGCUGGUGCAGCUGGCAGCCCAAGCUGAAA-------AACAUUAGUUGUAAGUGUAUC
(-------------((((((((((...((.......))((((((....)))))))))))))..((((((..-------....))))))))))....... ( -24.20)
>DroYak_CAF1 5581 92 + 1
UUUACGCUGCCGCUUGUGGUUGCCUUACAUUUUAAUUGAGUUGCUUGUGCAGCUGGCAGGCCAAACAGAAA-------AACAUUAGUUGUAUCUGUAUC
......(((((((........))...............((((((....))))))))))).....(((((..-------(((....)))...)))))... ( -23.80)
>consensus
UUUACGCUGCCGCUUGCGGUUGCCUUACAUUUUAAUUGAGUUGCUUGUGCAGCUGGCAGCCCAAACAGAAA_______AACAUUAGUUGUAUCUGUAUC
.................(((((((...((.......))((((((....)))))))))))))..................(((.....)))......... (-15.47 = -16.13 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:47 2006