Locus 5802

Sequence ID X_DroMel_CAF1
Location 15,046,258 – 15,046,363
Length 105
Max. P 0.939049
window9413

overview

Window 3

Location 15,046,258 – 15,046,363
Length 105
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 74.86
Mean single sequence MFE -38.14
Consensus MFE -15.36
Energy contribution -19.84
Covariance contribution 4.48
Combinations/Pair 1.04
Mean z-score -2.14
Structure conservation index 0.40
SVM decision value 1.30
SVM RNA-class probability 0.939049
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15046258 105 - 22224390
-CCAAACCGGAAGUUG------GGCGGAUGCGGAAACAGACGAAAGGGCUGAAAAUGGCCGGC-AGCAAGGAUAAUGACGAUGCCGUCUGAU-------GUCUGAUGCCUCCCACUCCGA
-......((((.((.(------((.((...((((..(((((.....((((......))))(((-(....(........)..)))))))))..-------.))))...)).))))))))). ( -40.50)
>DroSec_CAF1 2045 105 - 1
-CCAAACCGGAAGUCG------GGCGGAAGCGGAAACAGACGAAAGGGCUAAAAAUGGCCGGC-AGCAACGAUAAUGACGAUGCCGUCUGAU-------GUCUGAAGCUUCCCACUCCGA
-......((((.((.(------((.((...((((..(((((.....(((((....)))))(((-(.((.......))....)))))))))..-------.))))...)).))))))))). ( -38.00)
>DroAna_CAF1 1741 92 - 1
----ACCCGGAAGUGGGGCCAGGGCGGAAGCGGAAACAGACGAGAGG-CGGAGAGAGACAGACCCACUCCGAUUCUGGCGGCGG---CGGGA-------AUCUGGUC-------------
----..(((((.((((((((...((....))(....)........))-)(........)...))))))))((((((.((....)---).)))-------))).))..------------- ( -37.20)
>DroEre_CAF1 1818 105 - 1
-CCAAACCGGAAGUCG------GGCGGAAGCGGAAACAGACGAAAGGGCUGAAAAUGGCCGGC-AGCAACGAUAAUGGCGAUGCCGGCUGAU-------GUCUGAUGCUUCCCAUUCCGA
-......(((((...(------((.((...((((..(((.(....)..))).....(((((((-(((..........))..))))))))...-------.))))...)).))).))))). ( -38.10)
>DroYak_CAF1 1896 113 - 1
ACCAAACCGAAAGUCG------GGCGGAAGCGGAAACAGACGAAAGGGCUGAAAAUGGCCGGC-AGCAACGAUAAUGACGAUGCCGUCUGAUGUCCGAUGUCUGAUGCUUCCCAUUCCGA
........(((.((((------((((....((((..(((((.....((((......))))(((-(.((.......))....)))))))))...)))).))))))))..)))......... ( -36.90)
>consensus
_CCAAACCGGAAGUCG______GGCGGAAGCGGAAACAGACGAAAGGGCUGAAAAUGGCCGGC_AGCAACGAUAAUGACGAUGCCGUCUGAU_______GUCUGAUGCUUCCCACUCCGA
.......((((.(((.......)))(((((((....(((((.....((((......))))................((((....))))...........))))).)))))))...)))). (-15.36 = -19.84 +   4.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:42 2006