| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 15,042,622 – 15,042,722 |
| Length | 100 |
| Max. P | 0.683916 |
| Location | 15,042,622 – 15,042,722 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.83 |
| Mean single sequence MFE | -23.37 |
| Consensus MFE | -16.97 |
| Energy contribution | -16.97 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.30 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.683916 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15042622 100 - 22224390 ---------AUGCUCGGGAUGG---------CA--AGGAUGUUGGCCUGGUUGAGACAUCGUUUCGGCAACAAAAGCCAACAAAAGGCAACAAUUCUUACCCACUAAUAAAGAAUAAUAU ---------......(((....---------.(--(((((((((.(((.((((((((...)))))(((.......))))))...))))))).)))))).))).................. ( -23.90) >DroPse_CAF1 76868 100 - 1 --------------------CGCAAGAAGAGCCGGAGGAAGGCAGCCUGGUUGAGACAUCGUUUCGGCAACAAAAGCCAACAAAAGGCAACAAUUCUUACCCACUAAUAAAGAAUAAUAU --------------------...(((((..(((.......))).((((.((((((((...)))))(((.......))))))...)))).....)))))...................... ( -23.00) >DroEre_CAF1 60339 100 - 1 ---------ACGCUCGGGAUGG---------CA--AGGAUAUUGGCCUGGUUGAGACAUCGUUUCGGCAACAAAAGCCAACAAAAGGCAACAAUUCUUACCCACUAAUAAAGAAUAAUAU ---------......(((....---------.(--(((((....((((.((((((((...)))))(((.......))))))...))))....)))))).))).................. ( -22.30) >DroYak_CAF1 71704 118 - 1 AUGGCAAGGAUGCUCGGGAUGGCAAGGAUGGCA--AGGAUGUUGGCCUGGUUGAGACAUCGUUUCGGCAACAAAAGCCAACAAAAGGCAACAAUUCUUACCCACUAAUAAAGAAUAAUAU ..((((....)))).(((...((.......))(--(((((((((.(((.((((((((...)))))(((.......))))))...))))))).)))))).))).................. ( -28.80) >DroAna_CAF1 49787 96 - 1 ---------A-GCCAGGGA--G---------CA---GGGGGAGGGCCUGGUUGAGACGUCGUUUCGGCAACAAAAGCCAACAAAAGGCAACAAUUCUUACCCACUAAUAAAGAAUAAUAC ---------.-((......--)---------).---(((..(((((((.((((((((...)))))(((.......))))))...))))......)))..))).................. ( -22.40) >DroPer_CAF1 80836 100 - 1 --------------------CGCAAGAAGAGCCGGAGGAAAGCAGCCUGGUUGAGACAUCGUUUCGGCAACAAAAGCCAACAAAAGGCAACAAUUCUUACCCACUAAUAAAGAAUAAUAU --------------------(....)...((..(((((((....((((.((((((((...)))))(((.......))))))...)))).....))))).))..))............... ( -19.80) >consensus _________A_GCUCGGGA_GG_________CA__AGGAUGUUGGCCUGGUUGAGACAUCGUUUCGGCAACAAAAGCCAACAAAAGGCAACAAUUCUUACCCACUAAUAAAGAAUAAUAU ............................................((((.((((((((...)))))(((.......))))))...))))....((((((...........))))))..... (-16.97 = -16.97 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:39 2006