Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,642,730 – 1,642,842 |
Length | 112 |
Max. P | 0.726790 |
Location | 1,642,730 – 1,642,842 |
---|---|
Length | 112 |
Sequences | 4 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 88.14 |
Mean single sequence MFE | -29.00 |
Consensus MFE | -19.88 |
Energy contribution | -19.57 |
Covariance contribution | -0.31 |
Combinations/Pair | 1.09 |
Mean z-score | -2.10 |
Structure conservation index | 0.69 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.726790 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1642730 112 - 22224390 GCGGGAUAU----AUAGUAAAACCCGGCAUGUUU--UAUAGUUCUAUAGCAUCUAAGUGUGUUUCUGAGGACUGCUUUUUGUUUGGAAGAUGUAGAAAUACUUUCCAAGUGUUUUGCA (((((((((----...(((((((.......))))--)))((((((..(((((......)))))....)))))).........(((((((..(((....))))))))))))))))))). ( -27.70) >DroSec_CAF1 7622 109 - 1 GCGGGAUAUAUGUAUAGUAAAACCCGGCAUGUUC--UAUA-------AGCAUCUAAGUGUGUUUUUGAGGACUGCCUUUUGUUUGGAAGAUGUAGAAAUACUUUCCAAGUGUUUUGCA (((((((((................((((.((((--(..(-------(((((......))))))...)))))))))......(((((((..(((....))))))))))))))))))). ( -32.80) >DroEre_CAF1 9436 102 - 1 GCGGGAUA------UAAUAAAACCCGACAUGUUC--UAUA-------AGCAUCUAAGUGUGUUUG-CAGGACUGCUUUUUGUUUGGAAGAUGUAGAAAUACUUUCCAAGUGUUUUGCA ((((((((------(.((((((...(.((.((((--(.((-------(((((......)))))))-.)))))))).))))))(((((((..(((....))))))))))))))))))). ( -27.00) >DroYak_CAF1 7775 104 - 1 GCGGGAUA------UAAUAAAACCCGGCAUGUUCUCUAUA-------AGCAUCUAAGUGUGUUUG-CAGGACUGCUUUUUGUUUGGAAGAUGUGUAAAUACUUUCCAAGUGUUUUGCA ((((((((------(.((((((...((((.(((((...((-------(((((......)))))))-.)))))))))))))))(((((((.(((....))).)))))))))))))))). ( -28.50) >consensus GCGGGAUA______UAAUAAAACCCGGCAUGUUC__UAUA_______AGCAUCUAAGUGUGUUUG_CAGGACUGCUUUUUGUUUGGAAGAUGUAGAAAUACUUUCCAAGUGUUUUGCA ((((((((.................((((.((((.............(((((......))))).....)))))))).....((((((((..(((....))))))))))))))))))). (-19.88 = -19.57 + -0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:27 2006