Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 250,447 – 250,605 |
Length | 158 |
Max. P | 0.965304 |
Location | 250,447 – 250,565 |
---|---|
Length | 118 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.78 |
Mean single sequence MFE | -23.13 |
Consensus MFE | -17.95 |
Energy contribution | -18.07 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.04 |
Mean z-score | -2.53 |
Structure conservation index | 0.78 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.717922 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 250447 118 + 22224390 UAGAAAUGAACGCGACAACAGAAAUAUCUAUAUGCAAGUAUACAUAUACUUGUAUCCCUCACUCUU-UUUCACUUUUUCUUUUUU-CGCCGAUCUCCUGCUCUCUUCUGCAGGUCCUGGC ..((((.(((.........(((....)))..((((((((((....))))))))))...........-.........)))...)))-)((((....(((((........)))))...)))) ( -24.70) >DroSim_CAF1 19195 118 + 1 UAGAAAUGAACGCGACAACAGAAAUAUCUAUAUGCAAGUAUGCAUAUACUUGUAUCUCUCACUCUU-UUUCACUUUUUCUUUUUU-CGCCGAUCUCCUGCUCUCUUCUGCAGGUCCUGGC .(((((((((...((....(((.(((..((((((((....))))))))..))).))).....))..-.))))...))))).....-.((((....(((((........)))))...)))) ( -26.60) >DroYak_CAF1 19996 112 + 1 UAGAAAUGAACGCAACAACAAAAAUAUCUAUAUGCAAGUAUGCAUAUAC--------CUUACUCUUUUUUCACCUUUUCUUUUUUCCGUCGAUCUCCUGCUCUCUUCUGCAGGUCCUGGC .(((((((((.(......).........((((((((....)))))))).--------...........))))...))))).......((((....(((((........)))))...)))) ( -18.10) >consensus UAGAAAUGAACGCGACAACAGAAAUAUCUAUAUGCAAGUAUGCAUAUACUUGUAUC_CUCACUCUU_UUUCACUUUUUCUUUUUU_CGCCGAUCUCCUGCUCUCUUCUGCAGGUCCUGGC .(((((((((.(......).........((((((((....))))))))....................))))...))))).......((((....(((((........)))))...)))) (-17.95 = -18.07 + 0.11)
Location | 250,447 – 250,565 |
---|---|
Length | 118 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 90.78 |
Mean single sequence MFE | -28.47 |
Consensus MFE | -24.16 |
Energy contribution | -23.83 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.06 |
Mean z-score | -2.15 |
Structure conservation index | 0.85 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.740228 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 250447 118 - 22224390 GCCAGGACCUGCAGAAGAGAGCAGGAGAUCGGCG-AAAAAAGAAAAAGUGAAA-AAGAGUGAGGGAUACAAGUAUAUGUAUACUUGCAUAUAGAUAUUUCUGUUGUCGCGUUCAUUUCUA (((....(((((........))))).....)))(-(((...(((...((((..-....(..((..(((((......))))).))..)..(((((....)))))..)))).))).)))).. ( -29.40) >DroSim_CAF1 19195 118 - 1 GCCAGGACCUGCAGAAGAGAGCAGGAGAUCGGCG-AAAAAAGAAAAAGUGAAA-AAGAGUGAGAGAUACAAGUAUAUGCAUACUUGCAUAUAGAUAUUUCUGUUGUCGCGUUCAUUUCUA (((....(((((........))))).....))).-.....((((...(((((.-..((...(((((((....((((((((....))))))))..)))))))....))...))))))))). ( -30.90) >DroYak_CAF1 19996 112 - 1 GCCAGGACCUGCAGAAGAGAGCAGGAGAUCGACGGAAAAAAGAAAAGGUGAAAAAAGAGUAAG--------GUAUAUGCAUACUUGCAUAUAGAUAUUUUUGUUGUUGCGUUCAUUUCUA .......(((((........)))))........(((((...(((...(..(...(((((((..--------.((((((((....))))))))..)))))))....)..).))).))))). ( -25.10) >consensus GCCAGGACCUGCAGAAGAGAGCAGGAGAUCGGCG_AAAAAAGAAAAAGUGAAA_AAGAGUGAG_GAUACAAGUAUAUGCAUACUUGCAUAUAGAUAUUUCUGUUGUCGCGUUCAUUUCUA (((....(((((........))))).....))).......((((...(((((......((((..........((((((((....))))))))((((....)))).)))).))))))))). (-24.16 = -23.83 + -0.33)
Location | 250,487 – 250,605 |
---|---|
Length | 118 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.34 |
Mean single sequence MFE | -16.80 |
Consensus MFE | -15.22 |
Energy contribution | -15.00 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.08 |
Mean z-score | -2.76 |
Structure conservation index | 0.91 |
SVM decision value | 1.58 |
SVM RNA-class probability | 0.965304 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 250487 118 + 22224390 UACAUAUACUUGUAUCCCUCACUCUU-UUUCACUUUUUCUUUUUU-CGCCGAUCUCCUGCUCUCUUCUGCAGGUCCUGGCUACGAAAACUCGUUUAAAUUAAGAUUCAACAUUCAUUUUU ((((......))))............-..........((((..((-.((((....(((((........)))))...)))).((((....))))...))..))))................ ( -18.40) >DroSim_CAF1 19235 118 + 1 UGCAUAUACUUGUAUCUCUCACUCUU-UUUCACUUUUUCUUUUUU-CGCCGAUCUCCUGCUCUCUUCUGCAGGUCCUGGCUACGAAAACUCGUUUAAAUUAAGAUUCAACAUUCAUUUUU .........(((.((((.........-..................-.((((....(((((........)))))...)))).((((....))))........)))).)))........... ( -18.80) >DroYak_CAF1 20036 112 + 1 UGCAUAUAC--------CUUACUCUUUUUUCACCUUUUCUUUUUUCCGUCGAUCUCCUGCUCUCUUCUGCAGGUCCUGGCUACGAAAACUCGUUUAAAUUAACAUUCAACAUUCAUUUUU .........--------..............................((((....(((((........)))))...)))).((((....))))........................... ( -13.20) >consensus UGCAUAUACUUGUAUC_CUCACUCUU_UUUCACUUUUUCUUUUUU_CGCCGAUCUCCUGCUCUCUUCUGCAGGUCCUGGCUACGAAAACUCGUUUAAAUUAAGAUUCAACAUUCAUUUUU ...............................................((((....(((((........)))))...)))).((((....))))........................... (-15.22 = -15.00 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:36 2006