Locus 5799

Sequence ID X_DroMel_CAF1
Location 15,041,051 – 15,041,169
Length 118
Max. P 0.993973
window9409

overview

Window 9

Location 15,041,051 – 15,041,169
Length 118
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 72.26
Mean single sequence MFE -33.58
Consensus MFE -12.56
Energy contribution -13.00
Covariance contribution 0.44
Combinations/Pair 1.41
Mean z-score -2.43
Structure conservation index 0.37
SVM decision value 2.44
SVM RNA-class probability 0.993973
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15041051 118 + 22224390
UCCAUUUCAUUCACCAUCCUACUUAAUGUAUAUCUGGGACGUAAUGGUUCCAUUAGGACAACCGCAAAUGUUCCAGAACAUUGCAGUUGGCAUUUGCCUGGAUGUCUGGGG--AAAAGAA
....((((.((((.(((((.(((((((((...((((((((((..(((((((....)))..))))...)))))))))))))))).))).(((....))).)))))..)))))--))).... ( -37.50)
>DroSec_CAF1 58954 105 + 1
UCCAUUUUAUUCACCAUCCUACUUAAUGUAUAUCUGGGACGUAAUGGUUCCAUUAGGACAACCGCAAAUGUUCCACGACAUU-------------UUCUGGAGGUCUGGGG--AAAAGAA
....((((.(((.(((.(((.((.(((((.....((((((((..(((((((....)))..))))...))))))))..)))))-------------....)))))..)))))--).)))). ( -26.20)
>DroEre_CAF1 58724 100 + 1
UCCACUUCAGUCGCCGUCCUACUUAAUGGAUAUCUGGGACGUAAUGGUUCCAUUAGGACAACCGCAAAUGUUUCAGCACACUGG-----------------AGGCC-CGGG--AAAAGAA
(((.(((((((....((((........))))..(((..((((..(((((((....)))..))))...))))..)))...)))))-----------------))...-..))--)...... ( -29.00)
>DroYak_CAF1 70445 120 + 1
UCCAUUUCAUUCACCAUCCUACUUAAUGUAUAUCUGGGACGUAAUGGUUCCAUUAGGACAACCGCAAACGUUCCAGGACAUUGCAGUUGACAUUUGUCUGUAGGUCUUGGGAAAAAAGAA
.........(((.(((.(((((.((((((...((((((((((..(((((((....)))..))))...)))))))))))))))).....(((....))).)))))...))))))....... ( -37.20)
>DroAna_CAF1 48767 97 + 1
UCCAUUUCGCUUUCCAUCC---UUAAUGGGUAUCUGGGCCGUAAUGGUUCCAUCACGGCGACCGCAGAACGGCUG------------UGGCAUUUAUCUGGAGGCG----G---AAGGA-
(((.(((((((....((((---.....)))).((..((((((.(((....))).)))))(.((((((.....)))------------))))......)..))))))----)---)))))- ( -38.00)
>consensus
UCCAUUUCAUUCACCAUCCUACUUAAUGUAUAUCUGGGACGUAAUGGUUCCAUUAGGACAACCGCAAAUGUUCCAGGACAUUG____UG_CAUUUGUCUGGAGGUCUGGGG__AAAAGAA
................................((((((((((..(((((((....)))..))))...))))))))))........................................... (-12.56 = -13.00 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:38 2006