Locus 5797

Sequence ID X_DroMel_CAF1
Location 15,031,025 – 15,031,117
Length 92
Max. P 0.687748
window9406

overview

Window 6

Location 15,031,025 – 15,031,117
Length 92
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 76.62
Mean single sequence MFE -29.92
Consensus MFE -15.89
Energy contribution -16.64
Covariance contribution 0.75
Combinations/Pair 1.21
Mean z-score -1.84
Structure conservation index 0.53
SVM decision value 0.32
SVM RNA-class probability 0.687748
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15031025 92 - 22224390
GUGGGCGCGGGUGAUGGGCUGGCUUGGAAUUUGCAUCAAUGCAAAUUCGAUUUGCAAUCGUUCAGGGCGAGC------CGGAAUCAGAAUUAGAAUC------------A
...........((((...(((((((((((((((((....)))))))))(((.....)))........)))))------))).))))...........------------. ( -27.20)
>DroSec_CAF1 48509 89 - 1
---GGCGUGGUUGAUGGGCUGGCUUGGAAUUUGCAUCAAUGCAAAUUCGAUUUGCAAUCGUUCAGGGCGAGC------CGGAAUCAGAAUUAGAAUC------------A
---.......(((((...(((((((((((((((((....)))))))))(((.....)))........)))))------))).)))))..........------------. ( -27.80)
>DroEre_CAF1 49431 103 - 1
GUGGGCGUGGCUGAUGGGCUG-CCCGGAAUUUGCAUCAAUGCAAAUUCGAUUUGCAAUCGUUCAGGGCGAGC------CGGAAUCAGAAUUAGAAUCAGAAUCAGAAGCA
......((..(((((.(((((-(((.(((((((((....)))))))))(((.....))).....)))).)))------).((.((.......)).))...)))))..)). ( -35.30)
>DroYak_CAF1 49149 110 - 1
GUGGGCGUGGCUGAUGGGCUGGCUAGGAAUUUGCAUCAAUGCAAAUUCGAUUAGCAGUCGUUCAGGGCGAGCCAGAGCCAGAAUCAGAAUUAGAAUUAGAAUCUGAAUCA
...(((.((((((.(((((..((((((((((((((....)))))))))..)))))....)))))...).)))))..))).((.(((((.((.......)).))))).)). ( -37.90)
>DroAna_CAF1 43414 90 - 1
----GCGGGCCAGACGG-----UCUGAAAUUUGCAUCAAUGCAAAUUCGAUUUGCAAUCGUUCAGGGCG-----------GAAUCGGAAACAGAAUCAGAUACAGACACA
----.((((((....))-----)))).((((((((....)))))))).(((((....((((.....)))-----------)....(....).)))))............. ( -21.40)
>consensus
GUGGGCGUGGCUGAUGGGCUGGCUUGGAAUUUGCAUCAAUGCAAAUUCGAUUUGCAAUCGUUCAGGGCGAGC______CGGAAUCAGAAUUAGAAUCAGA__C_GA__CA
..........(((((..(((.((((.(((((((((....)))))))))(((.....))).....)))).)))..........)))))....................... (-15.89 = -16.64 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:36 2006