Locus 5796

Sequence ID	X_DroMel_CAF1
Location	15,028,905 – 15,029,000
Length	95
Max. P	0.762835

overview

Window 5

Location	15,028,905 – 15,029,000
Length	95
Sequences	6
Columns	111
Reading direction	reverse
Mean pairwise identity	78.37
Mean single sequence MFE	-27.97
Consensus MFE	-15.98
Energy contribution	-17.28
Covariance contribution	1.31
Combinations/Pair	1.16
Mean z-score	-1.87
Structure conservation index	0.57
SVM decision value	0.51
SVM RNA-class probability	0.762835
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15028905 95 - 22224390
UAUG--GGAAUGGGCAAAAGUGCUCUGCUAUCCGCACAUUGCGUAUACGCCACGCUGGUCACGAUGCAAUAAUGCCCAGCGUUG---GCAUUAAAAACA-----------A
....--.(.(((.((((..((((..........)))).)))).))).)((((((((((.......(((....))))))))).))---))..........-----------. ( -27.61)
>DroPse_CAF1 59002 90 - 1
GACGUGGACAUCGGAAGA--------GCUGUCCGCAUAUUGCGUAUACGCCACUUUGGCCACGAUGCAAUAAUGCUCAACAUUG---ACAUUAAAACAA----------AA
...(((((((((....))--------..)))))))...((((((....(((.....)))....))))))(((((.(((....))---))))))......----------.. ( -28.30)
>DroSec_CAF1 46418 98 - 1
AAUG--GGAAUGGGCAAAAGUGCUCUGCUCUCCGUACAUUGCGUAUACGCCACGCUGGUCACGAUGCAAUAAUGCCCAGCGUUGGCGGCAUUAAAAACA-----------A
.(((--(((..(((((....)))))...)).))))............(((((((((((.......(((....))))))))).)))))............-----------. ( -30.31)
>DroSim_CAF1 49987 95 - 1
AAUG--GGAAUGGGCAAAAGUGCUCUGCUCUCCGCACAUUGCGUAUACGCCACGCUGGUCACGAUGCAAUAAUGCCCAGCGUUG---GCAUUAAAAACA-----------A
...(--(((..(((((....)))))...))))(((.....))).....((((((((((.......(((....))))))))).))---))..........-----------. ( -29.31)
>DroEre_CAF1 47419 94 - 1
AAUG--GGAAGGGGCA-AAGUGCUCUGCUCUCCGCACAUUGCGUAUACGCCACGCUGGUCACGAUGCAAUAAUGCCCAGCGUUG---ACAUUAAAAACA-----------A
((((--..((.(((((-..((((..........))))(((((((....(((.....)))....)))))))..)))))....)).---.)))).......-----------. ( -25.60)
>DroWil_CAF1 51672 99 - 1
-AAG--GGAAAAUG-AAAAUUGCU--G--CUCUGCACAUUGCGUAUACGCCAUGUUGGUCACGAUGCAAUAAUGC-CAACGAAG---GCAUUAAGACCCUCUCGUAUGAGA
-..(--((......-.....(((.--.--....)))..((((((....(((.....)))....))))))((((((-(......)---))))))...)))((((....)))) ( -26.70)
>consensus
AAUG__GGAAUGGGCAAAAGUGCUCUGCUCUCCGCACAUUGCGUAUACGCCACGCUGGUCACGAUGCAAUAAUGCCCAGCGUUG___GCAUUAAAAACA___________A
...........(((((...((((..........))))(((((((....(((.....)))....)))))))..))))).................................. (-15.98 = -17.28 +   1.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:35 2006