Locus 5795

Sequence ID X_DroMel_CAF1
Location 15,028,727 – 15,028,835
Length 108
Max. P 0.888593
window9404

overview

Window 4

Location 15,028,727 – 15,028,835
Length 108
Sequences 3
Columns 108
Reading direction forward
Mean pairwise identity 91.98
Mean single sequence MFE -24.56
Consensus MFE -21.03
Energy contribution -21.92
Covariance contribution 0.89
Combinations/Pair 1.07
Mean z-score -2.61
Structure conservation index 0.86
SVM decision value 0.95
SVM RNA-class probability 0.888593
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15028727 108 + 22224390
AAUAAACUUGCUUAACAUUAUUUCGAUUAGGCCCAUCAUCAAACUAAUUGAAGUUCUAAUAGCAUUUUGUUAUAUCUAAGGCUAGUAAGAAGCGAUUUCUUCAGUUUU
((((((..((((.......(((((((((((.............)))))))))))......)))).))))))......((((((.(.((((((...))))))))))))) ( -19.74)
>DroSec_CAF1 46240 108 + 1
AACUAACUUGCUUUACAUAAUUUCAAUUAGGCCCAUGAUCAAACUAAUUGAAGAUCUAAUAGCAUUUUGCCUUAUCUAAGGCAAGUAAGAAGGGAUGUCUUCAGUUUU
((((.((((((((((.((((((((((((((.............))))))))))........((.....)).)))).))))))))))..(((((....))))))))).. ( -26.62)
>DroSim_CAF1 49809 108 + 1
AACUAACUUGCUUUACAUAAUUUCAAUUAGGCCCAUGAUCAAACUAAUUGAAGAUCUAAUAGCAUUUUGCUUUAUCUAAGGCAAGUAAGAAGGGAUUUCUUCAGUUUU
((((.((((((((((.((((((((((((((.............)))))))))).......(((.....))))))).))))))))))..(((((....))))))))).. ( -27.32)
>consensus
AACUAACUUGCUUUACAUAAUUUCAAUUAGGCCCAUGAUCAAACUAAUUGAAGAUCUAAUAGCAUUUUGCUUUAUCUAAGGCAAGUAAGAAGGGAUUUCUUCAGUUUU
.....((((((((((.((((((((((((((.............))))))))))........((.....)).)))).))))))))))..((((......))))...... (-21.03 = -21.92 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:34 2006