Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,028,524 – 15,028,623 |
Length | 99 |
Max. P | 0.672279 |
Location | 15,028,524 – 15,028,623 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 89.07 |
Mean single sequence MFE | -23.30 |
Consensus MFE | -18.32 |
Energy contribution | -18.88 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.26 |
Mean z-score | -1.58 |
Structure conservation index | 0.79 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.672279 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15028524 99 + 22224390 GUUGUCACUUGGAUUUAAGAUGCAGCUGUGUAGCAGAUGUAACUCAUCAAAAUCCAAUCAGGUACAAUAUCUAAUCAAUGCACCAUA----ACGUAUUGCCGC (((((.((((((((((........(((....))).((((.....)))).)))))))....)))))))).......((((((......----..)))))).... ( -20.00) >DroSec_CAF1 46043 99 + 1 GUUGUCGCUUGGAUUUAAGCUGCAGCUGUGUAGCAGAUGUAACUCAUCAAAAUCCAAUCAGGUACAAUAUCUAAUCAAUGCACCAUA----ACGCAUUGCCGC (((((.((((((((((..((((((....)))))).((((.....)))).)))))))....)))))))).......((((((......----..)))))).... ( -27.60) >DroSim_CAF1 49612 99 + 1 GUUGUCGCUUGGAUUUAAGCUGCAGCUGUGUAGCAGAUGUAACUCAUCAAAAUCCAAUCAGGUACAAUAUCUAAUCAAUGCACCAUA----ACGCAUUGCCGC (((((.((((((((((..((((((....)))))).((((.....)))).)))))))....)))))))).......((((((......----..)))))).... ( -27.60) >DroEre_CAF1 47067 103 + 1 GUUGUCGCUUGGACUUAAACUGCAGCUCUGUAGCAGUUGUUACUCAUCAAAAUCCAAUCAGGCACAAUAUCUUAUCGAUACUCAAUUACUUACGUAUUGCCGC (((((.((((((.....((((((.((...)).))))))(.....)............))))))))))).......((((((............)))))).... ( -17.80) >DroYak_CAF1 47467 99 + 1 GUUGUCGCUGGGAUUUUAACUGCAGCUGUGCAGCAGUUGUAACUCAUUAAAAUCCAAUCAGGUGCAAUAUCUAAUCAAUACACAAUA----ACGCAAUGCCGC ((((.((((.(((((((((.((((((((.....)))))))).....))))))))).....))))))))...................----............ ( -23.50) >consensus GUUGUCGCUUGGAUUUAAGCUGCAGCUGUGUAGCAGAUGUAACUCAUCAAAAUCCAAUCAGGUACAAUAUCUAAUCAAUGCACCAUA____ACGCAUUGCCGC (((((.((((((((((..((((((....)))))).((((.....)))).)))))))....)))))))).......((((((............)))))).... (-18.32 = -18.88 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:33 2006