Locus 5793

Sequence ID X_DroMel_CAF1
Location 15,028,106 – 15,028,198
Length 92
Max. P 0.565104
window9402

overview

Window 2

Location 15,028,106 – 15,028,198
Length 92
Sequences 6
Columns 92
Reading direction forward
Mean pairwise identity 72.12
Mean single sequence MFE -29.93
Consensus MFE -16.28
Energy contribution -16.62
Covariance contribution 0.34
Combinations/Pair 1.12
Mean z-score -1.45
Structure conservation index 0.54
SVM decision value 0.06
SVM RNA-class probability 0.565104
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15028106 92 + 22224390
CGGAACGGGCGCAGUGUCACUGCACUGGCCACGCCCUCAGCUGCACAUUGAAGCCAAAGCAUACAUGUGUCUGCUCGGUGUCCAGCAAAACC
.((...(((((((((((....))))))....)))))...((((.(((((((.((....(((....)))....))))))))).))))....)) ( -33.80)
>DroPse_CAF1 58360 76 + 1
CGGAAUGGGCGCAGUGUCACUGCACUGACCACGCCUCCAGCUGCAG--UGA--------------CGGACCGAGCCAGUGGCCAACGCACAC
.....(((.(((...((((((((((((..........))).)))))--)))--------------)((......)).))).)))........ ( -28.40)
>DroSec_CAF1 45677 76 + 1
CGGAACGGGCGCAGUGUCACUGCACUGGCCACGCCCUCAGCUGC----------------AUACAUGUGUCUGCUCGGAGUCCAGCACAACC
.(((.(((((.((((((....))))))))).))..(((....((----------------(.((....)).)))...))))))......... ( -24.70)
>DroEre_CAF1 46656 87 + 1
CGGAACGGGCGCAGUGUCACUGCACUGGCCACGCCCUCAGCUGCACAUUGUAGCCAAAACAUACAUGUGUCUGCUCGGAGUCCAGUG-----
.(((.(((((.((((((....))))))))).))..((((((.((((((.(((.........)))))))))..)))..))))))....----- ( -30.00)
>DroYak_CAF1 47037 88 + 1
CGGAACGGGCGCAGUGUCACUGCACUGGCCACGCCCUCAGCUGCACAUUGAAGCCAAAACACACAUGUGUCUGCUCGGAGUCCAGCC----C
.((...(((((((((((....))))))....)))))...((((.((.((((.((....((((....))))..)))))).)).)))))----) ( -29.70)
>DroPer_CAF1 58996 76 + 1
CGGAAUGGGCGCAGUGUCACUGCACUGACCACGCCUCCAGCUGCAG--UGA--------------CGGACCGAGCCAGUGCCCAACGCACAC
.....(((((((...((((((((((((..........))).)))))--)))--------------)((......)).)))))))........ ( -33.00)
>consensus
CGGAACGGGCGCAGUGUCACUGCACUGGCCACGCCCUCAGCUGCAC__UGA_________AUACAUGUGUCUGCUCGGAGUCCAGCGCA__C
.(((.(((((.((((((....)))))).....((........))............................)))))...)))......... (-16.28 = -16.62 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:31 2006