Locus 5791

Sequence ID X_DroMel_CAF1
Location 15,026,302 – 15,026,401
Length 99
Max. P 0.956973
window9398

overview

Window 8

Location 15,026,302 – 15,026,401
Length 99
Sequences 4
Columns 99
Reading direction reverse
Mean pairwise identity 92.42
Mean single sequence MFE -20.10
Consensus MFE -16.83
Energy contribution -17.70
Covariance contribution 0.87
Combinations/Pair 1.05
Mean z-score -2.56
Structure conservation index 0.84
SVM decision value 1.47
SVM RNA-class probability 0.956973
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15026302 99 - 22224390
UUAAAUUCAAUUAUACUCGCUGGGCACUGAACCAUAAAUCCAGCAAAAAUUGUUGCAGCCAUGGAUGGACAUCCAUCCAUCAAUCACUCAGUCCAUCAA
......................((.(((((............((((......))))....((((((((....)))))))).......)))))))..... ( -23.20)
>DroSec_CAF1 43825 99 - 1
UUAAAUUCAAUUAUACUCGCUGGGCACUGACCCAUAAAUCCAGCAAAAAUUGUUGCAGCCAUGGAUGGACAUCCAUCCAUCAAUCACUCAGUCCAUCAA
......................((.(((((............((((......))))....((((((((....)))))))).......)))))))..... ( -22.90)
>DroSim_CAF1 47316 99 - 1
UUAAAUUCAAUUAUACUCGCUGGGCACUGACCCAUAAAUCCAGCAAAAAUUGUUGCAGCCAUGGAUGGACAUCCAUCCAUCAAUCACUCAGUCCAUCAA
......................((.(((((............((((......))))....((((((((....)))))))).......)))))))..... ( -22.90)
>DroEre_CAF1 44773 97 - 1
UUAAAUUCAAUUAUGCGCGCAGGGCACUGACCCAUAAAUCAAGCAAAAAUUGUUGCAGCUAUUC--GUACGUCCAUCAAUCAAUCACUCAGUCAAACAA
..............(((..(.(((......))).........((((......))))........--)..)))........................... ( -11.40)
>consensus
UUAAAUUCAAUUAUACUCGCUGGGCACUGACCCAUAAAUCCAGCAAAAAUUGUUGCAGCCAUGGAUGGACAUCCAUCCAUCAAUCACUCAGUCCAUCAA
......................((.(((((............((((......))))....((((((((....)))))))).......)))))))..... (-16.83 = -17.70 +   0.87)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:28 2006