Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,642,457 – 1,642,559 |
Length | 102 |
Max. P | 0.623111 |
Location | 1,642,457 – 1,642,559 |
---|---|
Length | 102 |
Sequences | 4 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 92.22 |
Mean single sequence MFE | -23.65 |
Consensus MFE | -20.94 |
Energy contribution | -21.00 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.07 |
Mean z-score | -1.45 |
Structure conservation index | 0.89 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.623111 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1642457 102 + 22224390 UAUACUUAGUUGGAAG-AAGAUCAGACAUAUACAAUAGUAUGCUAGUCGAGUCCUCUACUCUUGUUAUGGAAUGGUUUUAACCAUUCACCUACUAAGUUGGUU ...(((((((.((.((-(.(((..(((.(((((....)))))...)))..))).)))............(((((((....))))))).)).)))))))..... ( -28.00) >DroSec_CAF1 7356 102 + 1 UAAACUUAGUUGGAAG-AAGAUCAGACAUUUACAAUAGUAUGCUAGUCGAGUGCUCAACUCUUGUUAUGGAAUGGCUUUAACUAUUCACCUACUAAGUUGGUU ..((((((((.((((.-((((...(((((((....(((....)))...))))).))...)))).))...((((((......)))))).)).)))))))).... ( -24.10) >DroEre_CAF1 9175 103 + 1 UAUACUUAGUUGGGAGAAAGAUCCGAUAUAUACAAUAGAAUGCUAGUCGAGUGCUCUACUCUUGUUAUGGAAUGGCUUUAACUAUUCACCUACUAAGUUGGUU ...(((((((.(((............((((.((((((((..(((.....)))..))))...))))))))((((((......)))))).))))))))))..... ( -21.50) >DroYak_CAF1 7506 103 + 1 UAUACUUAGUUGGGAUAAAAAUCAGAUAUAUACAAUAGUGUGCUAGUCGAGUGCUCUACUCUUGUUAUGGAACGGCUUUAACUAUUCACCUACUAAGUUGGUU ...(((((((.(((((....)))..........((((((.....(((((((((...)))))..(((....)))))))...))))))..)).)))))))..... ( -21.00) >consensus UAUACUUAGUUGGAAG_AAGAUCAGACAUAUACAAUAGUAUGCUAGUCGAGUGCUCUACUCUUGUUAUGGAAUGGCUUUAACUAUUCACCUACUAAGUUGGUU ...(((((((.((.............((((.(((((((....)))...((((.....))))))))))))((((((......)))))).)).)))))))..... (-20.94 = -21.00 + 0.06)
Location | 1,642,457 – 1,642,559 |
---|---|
Length | 102 |
Sequences | 4 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 92.22 |
Mean single sequence MFE | -20.98 |
Consensus MFE | -15.62 |
Energy contribution | -15.75 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.08 |
Mean z-score | -1.75 |
Structure conservation index | 0.74 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1642457 102 - 22224390 AACCAACUUAGUAGGUGAAUGGUUAAAACCAUUCCAUAACAAGAGUAGAGGACUCGACUAGCAUACUAUUGUAUAUGUCUGAUCUU-CUUCCAACUAAGUAUA .....(((((((.((.(((((((....)))))))............((((((.(((((....((((....))))..))).))))))-)).)).)))))))... ( -27.40) >DroSec_CAF1 7356 102 - 1 AACCAACUUAGUAGGUGAAUAGUUAAAGCCAUUCCAUAACAAGAGUUGAGCACUCGACUAGCAUACUAUUGUAAAUGUCUGAUCUU-CUUCCAACUAAGUUUA ....((((((((.((.....((....((.((((..........((((((....)))))).(((......))).)))).))...)).-...)).)))))))).. ( -19.60) >DroEre_CAF1 9175 103 - 1 AACCAACUUAGUAGGUGAAUAGUUAAAGCCAUUCCAUAACAAGAGUAGAGCACUCGACUAGCAUUCUAUUGUAUAUAUCGGAUCUUUCUCCCAACUAAGUAUA .....(((((((.((.((((.((....)).))))........(((.((((.(..(((...(((......))).....)))..)))))))))).)))))))... ( -19.40) >DroYak_CAF1 7506 103 - 1 AACCAACUUAGUAGGUGAAUAGUUAAAGCCGUUCCAUAACAAGAGUAGAGCACUCGACUAGCACACUAUUGUAUAUAUCUGAUUUUUAUCCCAACUAAGUAUA .....(((((((.((.((.(((((......(((....)))..((((.....)))))))))(((......)))................)))).)))))))... ( -17.50) >consensus AACCAACUUAGUAGGUGAAUAGUUAAAGCCAUUCCAUAACAAGAGUAGAGCACUCGACUAGCAUACUAUUGUAUAUAUCUGAUCUU_CUCCCAACUAAGUAUA .....(((((((.((.((((.((....)).))))........((((.....))))(((..(((......)))....)))...........)).)))))))... (-15.62 = -15.75 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:26 2006