Locus 5788

Sequence ID X_DroMel_CAF1
Location 15,020,852 – 15,020,959
Length 107
Max. P 0.976009
window9393

overview

Window 3

Location 15,020,852 – 15,020,959
Length 107
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 76.62
Mean single sequence MFE -30.98
Consensus MFE -15.54
Energy contribution -16.34
Covariance contribution 0.80
Combinations/Pair 1.20
Mean z-score -2.36
Structure conservation index 0.50
SVM decision value 1.76
SVM RNA-class probability 0.976009
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15020852 107 - 22224390
GACUCUUCUUGUUUUACAUCUACCGCCUCUUCCGGAGUGGUUUUCACCUCAUAAUCAGGUGGAGUAGCUACCUCUUUCUGGAGAGGUUUGGC---UACCUCCUUUUCCGA
................................(((((.((..(((((((.......)))))))(((((((((((((....)))))))..)))---)))..))..))))). ( -31.40)
>DroSec_CAF1 38493 98 - 1
GGCUCUUCUUGUUUUACAUC---------UAUCGGAGUGGCCUUCACCUCAUAUUCAGGUGGAGUAUCUACCUCUUUCUGGGGAGGAUUGGC---UACCUCCUUUUCCGA
....................---------....(((((((((.((.(((((.....((((((.....)))))).....)))))..))..)))---)).))))........ ( -29.10)
>DroSim_CAF1 42018 107 - 1
GGCUCUUCUUGUUUUACAUCUACCGCCUCUAUCGGAGUGGCCUUCACCUCAUAUUCAGGUGGAGUAUCUACCUCUUUCUGGGGAGGAUUGGC---UACCUCCUUUUCCGA
(((......((.....))......)))......(((((((((.((.(((((.....((((((.....)))))).....)))))..))..)))---)).))))........ ( -32.70)
>DroEre_CAF1 39425 107 - 1
GACUCUUCUGGUUUUUCAUCUACCGCGUCUUUGGGAGAGGUCUUGCCCUCAUGUUCAGGUAGGGUAUCUACCUCUUUCUGGGCAGGAUUGGC---CAACUCCUUUUCUGA
(((.....((((.........)))).))).(..(((((((..(((((.((.((((((((.(((((....))).)).)))))))).))..)).---)))..)))))))..) ( -31.70)
>DroYak_CAF1 39654 89 - 1
GGCUCUUCCUGUUUUUCAGCUACCACCUCUUGGGGA---------------------GGUAGAGUGUCUACCUCUUUCUGGGGAGGAUUGGCUUCCACCUCCUUUUGUGA
((((..((((((......)).....((((..(((((---------------------(((((.....))))))))))..))))))))..))))..(((........))). ( -30.00)
>consensus
GGCUCUUCUUGUUUUACAUCUACCGCCUCUUUCGGAGUGGCCUUCACCUCAUAUUCAGGUGGAGUAUCUACCUCUUUCUGGGGAGGAUUGGC___UACCUCCUUUUCCGA
((((.((((........................)))).))))...............(((((.....)))))....((.((((((((..((......)))))))))).)) (-15.54 = -16.34 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:24 2006