Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,019,641 – 15,019,734 |
Length | 93 |
Max. P | 0.993251 |
Location | 15,019,641 – 15,019,734 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 96.80 |
Mean single sequence MFE | -18.32 |
Consensus MFE | -18.39 |
Energy contribution | -18.23 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.05 |
Mean z-score | -1.31 |
Structure conservation index | 1.00 |
SVM decision value | 1.17 |
SVM RNA-class probability | 0.926150 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15019641 93 + 22224390 UCUCUGUUUUUGAACCUUUUGUGUUUA-AGUGAGUACUUUAUUUACCGCACUCUCGCCCUCUGACACUUUGGGGAAGCACUUUCCCACUUGUUC ...........((((.....(((((..-.(((((..................))))).....)))))..(((((((....)))))))...)))) ( -18.37) >DroSec_CAF1 37277 94 + 1 UCUCUGUUUCUGAACCUUUUGUGUUUAAAGUGAGUACUUUAUUUACCGCACUCUCGCCCUCUGACACUUUGGGGAAGCACUUUCCCACUUGUUC ...........((((.....(((((....(((((..................))))).....)))))..(((((((....)))))))...)))) ( -18.77) >DroSim_CAF1 40800 94 + 1 UCUCUGUUUCUGAACCUUUUGUGUUUAAAGUGAGUACUUUAUUUACCGCACUCUCGCCCUCUGACACUUUGGGGAAGCACUUUCCCACUUGUUC ...........((((.....(((((....(((((..................))))).....)))))..(((((((....)))))))...)))) ( -18.77) >DroEre_CAF1 38205 93 + 1 UCUCUGUUUCUGAACCUUUUGUGUUUA-AGUGAGUACUUUAUUUACCGCACUCUCGCCCUCUGACACUUUGGGGAAGUGCUUUCCCACUUGUUC ...........((((.....(((((..-.(((((..................))))).....)))))..(((((((....)))))))...)))) ( -18.37) >DroYak_CAF1 38362 93 + 1 UCUCCGUUUCUGAACCUUUUGUGUUUA-AGUGAGUACUUUAUUUACCGCACAUUCGCCCUCUGACACUUUGGGGAAGCACUUUCCCACUUGUUC ...........((((.....(((((..-.(((((((...))))))).((......)).....)))))..(((((((....)))))))...)))) ( -17.30) >consensus UCUCUGUUUCUGAACCUUUUGUGUUUA_AGUGAGUACUUUAUUUACCGCACUCUCGCCCUCUGACACUUUGGGGAAGCACUUUCCCACUUGUUC ...........((((.....(((((....(((((..................))))).....)))))..(((((((....)))))))...)))) (-18.39 = -18.23 + -0.16)
Location | 15,019,641 – 15,019,734 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 96.80 |
Mean single sequence MFE | -22.70 |
Consensus MFE | -19.94 |
Energy contribution | -20.34 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -2.18 |
Structure conservation index | 0.88 |
SVM decision value | 2.38 |
SVM RNA-class probability | 0.993251 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15019641 93 - 22224390 GAACAAGUGGGAAAGUGCUUCCCCAAAGUGUCAGAGGGCGAGAGUGCGGUAAAUAAAGUACUCACU-UAAACACAAAAGGUUCAAAAACAGAGA ((((..(.(((((.....))))))...((((..(((.....((((((..........)))))).))-)..)))).....))))........... ( -23.00) >DroSec_CAF1 37277 94 - 1 GAACAAGUGGGAAAGUGCUUCCCCAAAGUGUCAGAGGGCGAGAGUGCGGUAAAUAAAGUACUCACUUUAAACACAAAAGGUUCAGAAACAGAGA ((((..(.(((((.....))))))...((((..((((....((((((..........)))))).))))..)))).....))))........... ( -24.30) >DroSim_CAF1 40800 94 - 1 GAACAAGUGGGAAAGUGCUUCCCCAAAGUGUCAGAGGGCGAGAGUGCGGUAAAUAAAGUACUCACUUUAAACACAAAAGGUUCAGAAACAGAGA ((((..(.(((((.....))))))...((((..((((....((((((..........)))))).))))..)))).....))))........... ( -24.30) >DroEre_CAF1 38205 93 - 1 GAACAAGUGGGAAAGCACUUCCCCAAAGUGUCAGAGGGCGAGAGUGCGGUAAAUAAAGUACUCACU-UAAACACAAAAGGUUCAGAAACAGAGA ((((..(.(((((.....))))))...((((..(((.....((((((..........)))))).))-)..)))).....))))........... ( -23.00) >DroYak_CAF1 38362 93 - 1 GAACAAGUGGGAAAGUGCUUCCCCAAAGUGUCAGAGGGCGAAUGUGCGGUAAAUAAAGUACUCACU-UAAACACAAAAGGUUCAGAAACGGAGA ((((..(.(((((.....))))))...((((..(((...((..((((..........)))))).))-)..)))).....))))........... ( -18.90) >consensus GAACAAGUGGGAAAGUGCUUCCCCAAAGUGUCAGAGGGCGAGAGUGCGGUAAAUAAAGUACUCACU_UAAACACAAAAGGUUCAGAAACAGAGA ((((..(.(((((.....))))))...((((....((....((((((..........)))))).))....)))).....))))........... (-19.94 = -20.34 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:23 2006