Locus 5781

Sequence ID	X_DroMel_CAF1
Location	14,986,013 – 14,986,112
Length	99
Max. P	0.982506

overview

Window 9

Location	14,986,013 – 14,986,112
Length	99
Sequences	6
Columns	99
Reading direction	forward
Mean pairwise identity	88.62
Mean single sequence MFE	-23.75
Consensus MFE	-20.39
Energy contribution	-20.50
Covariance contribution	0.11
Combinations/Pair	1.05
Mean z-score	-2.91
Structure conservation index	0.86
SVM decision value	1.92
SVM RNA-class probability	0.982506
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14986013 99 + 22224390
AUUCAUGCCAUAAAUGGUCGAAUAACUGCAACAUCAUUUGACCAACAGCCAACAAGCAGCAGUGCAACUUUCCAAGCAGCUGCAGCAGCAUAAAAAACC
....((((......(((((((((............)))))))))...........((.(((((((..........))).)))).)).))))........ ( -23.10)
>DroSec_CAF1 3991 99 + 1
AUUCAUGCCAUAAAUGGUCGAAUAACUGCAACAUCAUUUGACCAACAGCCAACAAGCAGCAGUGCAACUUUCCAAGCAGCUGCAGCAGCAUAAAAAACC
....((((......(((((((((............)))))))))...........((.(((((((..........))).)))).)).))))........ ( -23.10)
>DroSim_CAF1 4016 99 + 1
AUUCAUGCCAUAAAUGGUCGAAUAACUGCAACAUCAUUUGACCAACAGCGAACAAGCAGCAGUGCAACUUUCCAAGCAGCUGCAGCAGCAUAAAAAACC
....((((......(((((((((............)))))))))...........((.(((((((..........))).)))).)).))))........ ( -23.10)
>DroEre_CAF1 3937 99 + 1
AUUCAUGCCAUAAAUGGUCGAAUAACUGCAACAUCAUUUGACCAACAGCCAACAAGCAGCAGUGCAACUUUCCAAGCAGCUGCAGCGGCGUUAAAAAAC
....(((((.....(((((((((............)))))))))...........((.(((((((..........))).)))).)))))))........ ( -26.40)
>DroYak_CAF1 3932 90 + 1
AUUCAUGCCAUAAAUGGUCGAAUAACUGCAACAUCAUUUGACCAGCAGCCAACAAGCAGCAGUGCAACUUUCCAAGCAGCUGCAGCAGCA---------
.....(((......(((((((((............)))))))))((.((......)).(((((((..........))).)))).)).)))--------- ( -22.50)
>DroAna_CAF1 3222 85 + 1
AGGCAUGCCAUAAAUGGUCGAAUAACUGCAACAUCACUUGACCAGCAACAG---UGCAGCA--GCAACUUUCCAAGCAGCUGCAGCGCCA---------
.(((.(((......(((((((................))))))))))....---((((((.--((..........)).))))))..))).--------- ( -24.29)
>consensus
AUUCAUGCCAUAAAUGGUCGAAUAACUGCAACAUCAUUUGACCAACAGCCAACAAGCAGCAGUGCAACUUUCCAAGCAGCUGCAGCAGCAUAAAAAACC
.....(((......(((((((((............)))))))))...........(((((..(((..........)))))))).)))............ (-20.39 = -20.50 +   0.11)

alignment

secondary structure

dotplot

Window 0

Location	14,986,013 – 14,986,112
Length	99
Sequences	6
Columns	99
Reading direction	reverse
Mean pairwise identity	88.62
Mean single sequence MFE	-29.03
Consensus MFE	-24.88
Energy contribution	-25.27
Covariance contribution	0.39
Combinations/Pair	1.07
Mean z-score	-1.84
Structure conservation index	0.86
SVM decision value	0.55
SVM RNA-class probability	0.778388
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14986013 99 - 22224390
GGUUUUUUAUGCUGCUGCAGCUGCUUGGAAAGUUGCACUGCUGCUUGUUGGCUGUUGGUCAAAUGAUGUUGCAGUUAUUCGACCAUUUAUGGCAUGAAU
.....(((((((((((((((((........)))))))..)).(((....)))...(((((.((((((......)))))).))))).....)))))))). ( -29.70)
>DroSec_CAF1 3991 99 - 1
GGUUUUUUAUGCUGCUGCAGCUGCUUGGAAAGUUGCACUGCUGCUUGUUGGCUGUUGGUCAAAUGAUGUUGCAGUUAUUCGACCAUUUAUGGCAUGAAU
.....(((((((((((((((((........)))))))..)).(((....)))...(((((.((((((......)))))).))))).....)))))))). ( -29.70)
>DroSim_CAF1 4016 99 - 1
GGUUUUUUAUGCUGCUGCAGCUGCUUGGAAAGUUGCACUGCUGCUUGUUCGCUGUUGGUCAAAUGAUGUUGCAGUUAUUCGACCAUUUAUGGCAUGAAU
.....((((((((((.((((.(((..........))))))).))...........(((((.((((((......)))))).))))).....)))))))). ( -29.50)
>DroEre_CAF1 3937 99 - 1
GUUUUUUAACGCCGCUGCAGCUGCUUGGAAAGUUGCACUGCUGCUUGUUGGCUGUUGGUCAAAUGAUGUUGCAGUUAUUCGACCAUUUAUGGCAUGAAU
..........((((((((((((........)))))))..)).(((....)))...(((((.((((((......)))))).))))).....)))...... ( -27.80)
>DroYak_CAF1 3932 90 - 1
---------UGCUGCUGCAGCUGCUUGGAAAGUUGCACUGCUGCUUGUUGGCUGCUGGUCAAAUGAUGUUGCAGUUAUUCGACCAUUUAUGGCAUGAAU
---------((((..(((((((........)))))))..((.(((....))).))(((((.((((((......)))))).))))).....))))..... ( -26.90)
>DroAna_CAF1 3222 85 - 1
---------UGGCGCUGCAGCUGCUUGGAAAGUUGC--UGCUGCA---CUGUUGCUGGUCAAGUGAUGUUGCAGUUAUUCGACCAUUUAUGGCAUGCCU
---------.(((((.(((((.(((.....))).))--))).)).---((((...(((((.((((((......)))))).)))))...))))...))). ( -30.60)
>consensus
GGUUUUUUAUGCUGCUGCAGCUGCUUGGAAAGUUGCACUGCUGCUUGUUGGCUGUUGGUCAAAUGAUGUUGCAGUUAUUCGACCAUUUAUGGCAUGAAU
..........((.(((((((((........)))))))..)).))......((((((((((.((((((......)))))).)))))...)))))...... (-24.88 = -25.27 +   0.39)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:13 2006