Locus 5779

Sequence ID X_DroMel_CAF1
Location 14,980,323 – 14,980,422
Length 99
Max. P 0.978274
window9376

overview

Window 6

Location 14,980,323 – 14,980,422
Length 99
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 70.85
Mean single sequence MFE -30.97
Consensus MFE -15.60
Energy contribution -15.61
Covariance contribution 0.01
Combinations/Pair 1.36
Mean z-score -2.16
Structure conservation index 0.50
SVM decision value 1.81
SVM RNA-class probability 0.978274
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14980323 99 + 22224390
GAUCGGAUUUGUGCCCAAGUCCGGUCGGUUGUUGCCCACUCGCACUACAAUUGUGGCGGGCUUAUUGCCUGCAA--CGGGAGCAUGUGACAAUAAACGUUA---
(((((((((((....))))))))))).(((((..(...(((.(((.......)))((((((.....))))))..--...)))...)..)))))........--- ( -39.80)
>DroVir_CAF1 6934 96 + 1
UAUUGGAUUUGUGCCCAAAUCCGGACGAUUGUUGCCAACGCGCACCACAAUUGUCGCCGGCUUGUUGCCUGCAAAUCAAUAAG----A----AGAAGACGAAAC
...((((((((....))))))))((((((((((((......)))..)))))))))((.(((.....))).))...........----.----............ ( -28.60)
>DroGri_CAF1 5593 102 + 1
AAUCGGAUUCGUGCCCAGAUCUGGACGAUUGUUACCCACACGGACCACAAUUGUUGCCGGUUUGUUACCUGAG--AAAGUAACCAUCAAAAAUGCAUGAAAUAC
.......(((((((...((.((((((((((((...((....))...))))))))..)))).))(((((.....--...)))))..........))))))).... ( -23.20)
>DroSec_CAF1 4996 99 + 1
GAUCGGAUUUGUGCCCAAGUCCGGUCGGUUGUUGCCCACUCGCACCACAAUUGUGGCGGGUUUAUUGCCUGCAA--UGGGAGCAUGUGGCAAUAAAUGUUA---
(((((((((((....)))))))))))..(((((((((((((.((.(((....)))((((((.....))))))..--)).)))..)).))))))))......--- ( -43.00)
>DroEre_CAF1 5199 92 + 1
GAUCGGAUUUGUGCCCAAGUCCGGACGAUUGUUACCCACUCGCACCACAAUUGUGGCGGGCUUAUUGCCUGCAA--AGGUAACGUAUGG-------UGUUA---
..(((((((((....)))))))))((.(((((((((.........(((....)))((((((.....))))))..--.))))))).)).)-------)....--- ( -34.50)
>DroWil_CAF1 4708 99 + 1
AAUUGGAUUUGUUCCCAAAUCGGGACGAUUAUUACCCACACGCACCACAAUAGUUGCUGGUUUAUUUCCUGUAA--AACAAUCAGACGAUAUUCCAUGUUA---
.((((((((((....))))))(((..........)))..........))))....(((((..((((..(((...--......)))..))))..))).))..--- ( -16.70)
>consensus
GAUCGGAUUUGUGCCCAAAUCCGGACGAUUGUUACCCACUCGCACCACAAUUGUGGCGGGCUUAUUGCCUGCAA__AAGUAACAUAUGA_AAUAAAUGUUA___
..(((((((((....)))))))))((((((((..............)))))))).((.(((.....))).))................................ (-15.60 = -15.61 +   0.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:10 2006