Locus 5778

Sequence ID X_DroMel_CAF1
Location 14,975,853 – 14,975,954
Length 101
Max. P 0.712629
window9375

overview

Window 5

Location 14,975,853 – 14,975,954
Length 101
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 85.69
Mean single sequence MFE -35.83
Consensus MFE -30.26
Energy contribution -30.27
Covariance contribution 0.00
Combinations/Pair 1.30
Mean z-score -1.79
Structure conservation index 0.84
SVM decision value 0.38
SVM RNA-class probability 0.712629
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14975853 101 + 22224390
UCCGGAGGUGGAGCUAUCGAAGCUGGCCACAGUGUUGCAGUCGGGCGAGGCGCGAUGGCGAUAGUGUUGUGUGGUUCGGUUUCUGUGGAU---UACACGAGAAA
.......(((...((((.(((((((((((((.((((((.((((.((...)).)))).))))))......))))).)))))))).))))..---..)))...... ( -35.60)
>DroSec_CAF1 666 101 + 1
UCCGGAGGUGGAGCUAUCGAAGCUGGCCACAGUGUUGCAGUCGGGCGAGGCGCGAUGGCGAUAGUGUUGCGUGGUUCGGUUUCUGGGGAU---UAUACGAGAAA
((((((..(.(((((((........((.(((.((((((.((((.((...)).)))).)))))).))).))))))))).)..))))))...---........... ( -37.90)
>DroEre_CAF1 700 101 + 1
UCCGGAGGUGGAGCUAUCGAAGCUGGCCACAGUGUUGCAGUCGGGCGAGGCGCGAUGGCGAUAGUGUUGUGUGGUUCGGUUUCUGGAGAU---AACAGAUCAAA
((((((..(.(((((((........((.(((.((((((.((((.((...)).)))).)))))).))).))))))))).)..))))))(((---.....)))... ( -37.80)
>DroWil_CAF1 837 100 + 1
UCCUGAGGUGGAGCUAUCAAAGCUGGCAACGGUAUUGCAGUCUGGUGAGGCACGAUGGCGAUAGUGUUGGGUAGUGCGAUUUCUAGGGAU---AA-AGAAAGAU
(((((((((.(.((((((........(((((.((((((.(((((......)).))).)))))).))))))))))).).))))).))))..---..-........ ( -29.00)
>DroYak_CAF1 1719 101 + 1
UCCGGAGGUGGAGCUAUCGAAGCUGGCCACAGUGUUGCAGUCGGGCGAGGCGCGAUGGCGAUAGUGUUGCGUGGUUCGGUUUCUGGAGAA---AAAAGAUUAAA
((((((..(.(((((((........((.(((.((((((.((((.((...)).)))).)))))).))).))))))))).)..))))))...---........... ( -38.80)
>DroAna_CAF1 2088 104 + 1
GCCGGAAGUGGAGCUGUCGAAGCUGGCGACCGUGUUGCAGUCGGGCGAGGCGCGAUGGCGGUAGUGUUGCGUGGUUCGAUUUCUGCGGAGGGGAAGAGACCAAG
((.((((((.((((..((((.((((.((.((..(((((.(((......)))))))))))).)))).))).)..)))).))))))))...((........))... ( -35.90)
>consensus
UCCGGAGGUGGAGCUAUCGAAGCUGGCCACAGUGUUGCAGUCGGGCGAGGCGCGAUGGCGAUAGUGUUGCGUGGUUCGGUUUCUGGGGAU___AACAGAACAAA
(((((((((.(((((((........((.(((.((((((.((((.((...)).)))).)))))).))).))))))))).)))))))))................. (-30.26 = -30.27 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:09 2006