Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 14,973,331 – 14,973,447 |
Length | 116 |
Max. P | 0.947906 |
Location | 14,973,331 – 14,973,447 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 81.03 |
Mean single sequence MFE | -30.25 |
Consensus MFE | -16.20 |
Energy contribution | -17.07 |
Covariance contribution | 0.87 |
Combinations/Pair | 1.00 |
Mean z-score | -3.02 |
Structure conservation index | 0.54 |
SVM decision value | 1.38 |
SVM RNA-class probability | 0.947906 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14973331 116 - 22224390 CUGGCAACUCUGCGGCUGCUAGGCCACCAAAUGGCUACACCAUAAAUACCAACUUUCGGUAUUUAAGCAACCCUGCGGACAAAAACUAUCGAUACUCGCGCAACGCGGCCACACUA .((((...(((((((.((((.(((((.....)))))......((((((((.......))))))))))))...))))))).................((((...))))))))..... ( -36.00) >DroSec_CAF1 641 116 - 1 CUGGCAACUUUGCGCCUGCUAAGCCACCAAAUGGCAGCACCAUAAAUACCAACUUUCGGUAUUUAAGCAACCCUGCGCAACACAACUAUCGAUACUCACGCAACACGGCCACACUA .((((....(((((........((((.....)))).((....((((((((.......)))))))).(((....)))))....................)))))....))))..... ( -29.50) >DroEre_CAF1 624 105 - 1 CUGGCAUCUCUCCACCUGCUAAAC-----------AACACUGUAAAUACCAGUUCUUGGUAUUUAAGCAACCCUUCGCAGCUGAACUAUCGAUAGUCGCGCUACGCGGCCACACUA .((((...........((((..((-----------(....)))(((((((((...))))))))).))))......(((((((((.(((....)))))).)))..)))))))..... ( -24.20) >DroYak_CAF1 643 116 - 1 CUGGCAUCUCUCCGCCUGCUAAACGUCCAAUUGGCAACUCCACAAAUACCAGUUUUCGGUAUUUAAGCAACCCUGCGCGGCAGAACUAUCGAUACUCGCGCAACGCGGCCACACUA .((((...(((((((.((((((........)))))).......(((((((.......)))))))..(((....))))))).)))............((((...))))))))..... ( -31.30) >consensus CUGGCAACUCUCCGCCUGCUAAACCACCAAAUGGCAACACCAUAAAUACCAACUUUCGGUAUUUAAGCAACCCUGCGCAGCAGAACUAUCGAUACUCGCGCAACGCGGCCACACUA .((((...........((((......((....))........((((((((.......))))))))))))...........................((((...))))))))..... (-16.20 = -17.07 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:08 2006