| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 14,968,652 – 14,968,761 |
| Length | 109 |
| Max. P | 0.728741 |
| Location | 14,968,652 – 14,968,761 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 65.08 |
| Mean single sequence MFE | -29.08 |
| Consensus MFE | -18.77 |
| Energy contribution | -19.19 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.13 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.728741 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14968652 109 + 22224390 --------CAAGCGAACGAUCCGCUCUAAGCGUUUACUU---UUCUUCCAAUUCCAGCCCGGCCACCGAGUGCCCCGCUACUCCUUGAUCAACUGGGGCCUCUGUGUGCCCUCCGGCUGC --------.(((..((((............))))..)))---............(((((.((((((.(((.((((((................))))))))).))).)))....))))). ( -34.19) >DroVir_CAF1 9550 101 + 1 --------CAAUC--AC-----CCUUCUUCCACCUCCU----UUCACGCUCUUACAGCCGGGUCACCGUGUACCGCGCUACUCCCUGAUCAAUUGGGGCAUCUGCGUGCCAUCGGGCUGC --------.....--..-----................----............(((((((....))......(((((....(((..(....)..))).....)))))......))))). ( -24.00) >DroGri_CAF1 7794 90 + 1 --------UA------U-----UCUUCGUACA-----------UCAUUUUUUUUUAGCCGGGUCAUCGCGUACCGCGCUACUCGCUGAUCAACUGGGGCAUCUGUGUGCCAUCCGGUUGC --------..------.-----..........-----------..........(((((.((((...((((...))))..))))))))).((((((((((((....)))))..))))))). ( -26.30) >DroYak_CAF1 14551 99 + 1 --------CAACCGGACGACA---------CGUUCACU----UUCUUGUAUUUCCAGCCUGGUCACCGAGUGCCCCGCUACUCGUUGAUCAACUGGGGCCUGUGUGUGCCCUCCGGCUGC --------.....(((((...---------)))))...----............(((((((((((.(((((((...)).))))).))))))...((((((.....).)))))..))))). ( -33.90) >DroMoj_CAF1 8089 106 + 1 --------CACUC--ACUAUCCGCCUCUUUCAUUCUCU----UUCUCUUUCUCUCAGCCUGGACAUCGUGUGCCUCGCUAUUCAUUGGUCAAUUGGGGCAUCUGCGUGCCAUCGGGCUGC --------.....--.......................----............((((((((.((.((((((((((((((.....)))).....)))))))..)))))...)))))))). ( -25.00) >DroAna_CAF1 6512 113 + 1 AGCUCCCGAAACCGGAUAA------UGAAGCCUCCGUCUUGCCUCUUCCA-UUUCAGCCCGGACACCGUGUGCCCCGCUACUCCCUGAUCAACUGGGGCAUCUGCGUGCCCUCCGGCUGC .............(((...------.((.((.........)).)).))).-...(((((.((((((((.((((((((................)))))))).)).)))...)))))))). ( -31.09) >consensus ________CAACC__AC_A____CUUCAUGCAUUCACU____UUCUUCCACUUUCAGCCCGGUCACCGUGUGCCCCGCUACUCCCUGAUCAACUGGGGCAUCUGCGUGCCAUCCGGCUGC ......................................................(((((.((.(((((.((((((((................)))))))).)).)))))....))))). (-18.77 = -19.19 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:05 2006