Locus 5773

Sequence ID X_DroMel_CAF1
Location 14,965,909 – 14,966,039
Length 130
Max. P 0.816003
window9367 window9368

overview

Window 7

Location 14,965,909 – 14,966,003
Length 94
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 77.72
Mean single sequence MFE -33.02
Consensus MFE -18.45
Energy contribution -19.37
Covariance contribution 0.92
Combinations/Pair 1.14
Mean z-score -1.94
Structure conservation index 0.56
SVM decision value 0.66
SVM RNA-class probability 0.816003
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14965909 94 - 22224390
CGAUUCAUGUCGACUCGUCUGGCGGUCACGU--CGAAGUCGAUGCUGA-A-GUCAACGGCGACGGCGACUGCAGCUUCACCUGCUGCCAGUUGGCAAU
........((((.(.(((.((((..((((((--((....))))).)))-.-))))))))))))(.((((((((((.......)))).)))))).)... ( -37.90)
>DroPse_CAF1 16260 96 - 1
CAAUUCAUGUCGACUCGUCUGGCGAUCAUGCAGCGGCGUCGA--CUGCAACUGCAACUGCAAGUCCGACUGAGCCAUCACCUGCGGCCAGUUGGCAAU
........((((((((((...((......)).)))).)))))--)((((........)))).(.(((((((.(((.........)))))))))))... ( -32.40)
>DroSec_CAF1 9874 95 - 1
CGAUUCAUGUCGACUCGUCUGGCGGUCACGU--CGAAGUCGAUGCUGAAA-GUCAACGGCGACUGCGACUGCAGCUUCACCUGCUGCCAGUUGGCAAU
........((((.(.(((.((((..((((((--((....))))).)))..-))))))))))))((((((((((((.......)))).))))).))).. ( -36.80)
>DroEre_CAF1 6130 71 - 1
-----------AACUCGUCUGGCGGUCACGU--CGAAGUCGG-------A-GUCAAC------UGCGACUGCAGCUUCACCUGCUGCCAGUUGGCAAU
-----------...(((.(((((((.((.((--.(((((.(.-------(-(((...------...)))).).))))))).))))))))).))).... ( -28.00)
>DroYak_CAF1 11874 82 - 1
CGAUUCAUGUCGACUCGUCUGGCGGUCACGU--CGAAGUCGA-------A-GUCAAC------UGCGACUGCAGCUUCACCUGCUGCCAGUUGGCAAU
.........((((((..((.((((....)))--)))))))))-------.-((((((------((.....(((((.......)))))))))))))... ( -30.80)
>DroPer_CAF1 16291 96 - 1
CAAUUCAUGUCGACUCGUCUGGCGAUCAUGCAGCGACGUCGA--CUGCAACUGCAACUGCAACUGCGACUGAGCCAUCACCUGCGGCCAGUUGGCAAU
........((((((((((...((......)).)))).)))))--)(((...(((....)))....((((((.(((.........)))))))))))).. ( -32.20)
>consensus
CGAUUCAUGUCGACUCGUCUGGCGGUCACGU__CGAAGUCGA__CUG__A_GUCAAC_GC_ACUGCGACUGCAGCUUCACCUGCUGCCAGUUGGCAAU
.........((((((((....(((....)))..))).))))).......................((((((((((.......)))).))))))..... (-18.45 = -19.37 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 8

Location 14,965,945 – 14,966,039
Length 94
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 72.92
Mean single sequence MFE -27.90
Consensus MFE -12.19
Energy contribution -11.63
Covariance contribution -0.55
Combinations/Pair 1.32
Mean z-score -1.75
Structure conservation index 0.44
SVM decision value -0.05
SVM RNA-class probability 0.509895
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14965945 94 - 22224390
AUAGUAUCAU--UUGAUGCAUUCGACUUUGGGGUCUU--UCGAUUCAUGUCGACUCGUCUGGCGGUCACGU--CGAAGUCGAUGCUGA-A-GUCAACGGCGA
...(((((..--..)))))..(((((....(((((..--..)))))..))))).(((((((((..((((((--((....))))).)))-.-))))..))))) ( -32.10)
>DroPse_CAF1 16296 93 - 1
-----CUCGUUUGUGUUGCAUUUGACUUUGGAGUCUA--UCAAUUCAUGUCGACUCGUCUGGCGAUCAUGCAGCGGCGUCGA--CUGCAACUGCAACUGCAA
-----...((((((((((((...((((....))))..--.........((((((((((...((......)).)))).)))))--))))))).))))..)).. ( -27.20)
>DroSec_CAF1 9910 95 - 1
AUAGUAUCAU--UUGAUGCAUUCGACUUUGGGGUCUU--UCGAUUCAUGUCGACUCGUCUGGCGGUCACGU--CGAAGUCGAUGCUGAAA-GUCAACGGCGA
...(((((..--..)))))..(((((....(((((..--..)))))..))))).(((((((((..((((((--((....))))).)))..-))))..))))) ( -33.50)
>DroWil_CAF1 7494 83 - 1
U---UAGAUU--UUGAUGCAUUUGACUUUGCACUCUCUUGCAAUCCAUGUCGACUCGUCUGGCGGUCAUGCUGCGGCUUCA--------A-GUUAAC-----
.---.....(--((((.((..(((((.(((((......))))).....)))))........((((.....)))).)).)))--------)-).....----- ( -18.40)
>DroYak_CAF1 11909 83 - 1
ACAGUAUCAU--UUGAUGCAUUCGACUUUGGGGUCUU--UCGAUUCAUGUCGACUCGUCUGGCGGUCACGU--CGAAGUCGA-------A-GUCAAC-----
...(((((..--..))))).(((((((((((((((..--..)))))((((.(((.((.....)))))))))--)))))))))-------)-......----- ( -28.10)
>DroPer_CAF1 16327 93 - 1
-----CUCGUUUGUGUUGCAUUUGACUUUGGAGUCUA--UCAAUUCAUGUCGACUCGUCUGGCGAUCAUGCAGCGACGUCGA--CUGCAACUGCAACUGCAA
-----...((((((((((((...((((....))))..--.........((((((((((...((......)).)))).)))))--))))))).))))..)).. ( -28.10)
>consensus
A___UAUCAU__UUGAUGCAUUCGACUUUGGAGUCUU__UCAAUUCAUGUCGACUCGUCUGGCGGUCACGC__CGAAGUCGA__CUG__A_GUCAAC_GC_A
.............((((......((((....))))..............((((((((....(((....)))..))).))))).........))))....... (-12.19 = -11.63 +  -0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:02 2006