| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 14,962,876 – 14,963,027 |
| Length | 151 |
| Max. P | 0.812473 |
| Location | 14,962,876 – 14,962,987 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 70.75 |
| Mean single sequence MFE | -35.53 |
| Consensus MFE | -10.60 |
| Energy contribution | -11.68 |
| Covariance contribution | 1.08 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.30 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.514374 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14962876 111 + 22224390 AACUAGAACGCUCUUUUGUAAU-CCGCAGCGUUUGCGCAGGAUUGCGCGAAUUUGUUGGGCAGGAAUAUUGGCCAAUAUUCGCGAGUCCAGCUGCCAUUUAGUUGUGUUUGG .....((((((((....(((((-((...(((....))).)))))))((((((..(((((.(((.....))).))))))))))))))).((((((.....)))))).)))).. ( -39.50) >DroPse_CAF1 14158 90 + 1 AACAAGAACAGUGUUGGGCAAU-CGG--------GCCAAGGAUUGCGCA------CUGCACUGAAGGAUUGGGCAAUGCUCCGCUGUCCAGCUGGCAGCCAGC-------GA ........((((((((.(((((-(..--------......)))))).))------..))))))..(((((((((...)).)))..)))).(((((...)))))-------.. ( -32.70) >DroSec_CAF1 6877 98 + 1 AACUAGAACGCUCUUUUGUAAU-C------------GCAGGAUUGCGCGAAUUCGUUGGACAGGAAUAUUGGCCAAUAUUAGCGAGUCCAGCUGCCAUUUAGUUGAGU-UGG (((((((.(((..((((((...-.------------))))))..))).......(((((((.(.((((((....))))))..)..))))))).....)))))))....-... ( -25.00) >DroEre_CAF1 3198 110 + 1 AACUAGAACGCUCUUUUGUAAU-CCGCGGCGUUUGCGCAGGAUUGCGCGAAUUUGUUGGCCUGGAAUAUUGGCCAAUAUUCGCGAGUCCAGCUGCCAUUUAGUGGAGU-UGG .........((((....(((((-((...(((....))).)))))))((((((..(((((((.........)))))))))))))))))((((((.((((...)))))))-))) ( -46.90) >DroYak_CAF1 8844 111 + 1 AACUAGAACGCUCUUUUGUAAUAUCGCAGCGUUUGCGCAGGAUUGCGCGAAUUUGUUGGGCAGGAAUAUUGGCCAAUAUACGCGAGUCCAGCUGCCAUUCAGUUGAGU-UGG .........((((..(((....((.(((((((....)).(((((.((((....((((((.(((.....))).))))))..))))))))).))))).)).)))..))))-... ( -36.40) >DroPer_CAF1 14165 90 + 1 AACAAGAACAGUGUUGGGCAAU-CGG--------GCCAAGGAUUGCGCA------CUGCACUGAAGGAUUGGGCAAUGCUCCGCUGUCCAGCUGGCAGCCAGC-------GA ........((((((((.(((((-(..--------......)))))).))------..))))))..(((((((((...)).)))..)))).(((((...)))))-------.. ( -32.70) >consensus AACUAGAACGCUCUUUUGUAAU_CCG________GCGCAGGAUUGCGCGAAUUUGUUGGACAGGAAUAUUGGCCAAUAUUCGCGAGUCCAGCUGCCAUUCAGUUGAGU_UGG .......................................(((((.(((......(((((.(.........).)))))....)))))))).((((.....))))......... (-10.60 = -11.68 + 1.08)
| Location | 14,962,915 – 14,963,027 |
|---|---|
| Length | 112 |
| Sequences | 4 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 86.36 |
| Mean single sequence MFE | -36.38 |
| Consensus MFE | -25.67 |
| Energy contribution | -26.43 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.65 |
| SVM RNA-class probability | 0.812473 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14962915 112 + 22224390 GAUUGCGCGAAUUUGUUGGGCAGGAAUAUUGGCCAAUAUUCGCGAGUCCAGCUGCCAUUUAGUUGUGUUUGGCUCUUGGCAUUCGGCCGAUACAGUGCUGCUGCUCAGUUUU ......((((((..(((((.(((.....))).)))))))))))((((.((((.((((..((....))..))))..(((((.....)))))......))))..))))...... ( -36.80) >DroSec_CAF1 6904 108 + 1 GAUUGCGCGAAUUCGUUGGACAGGAAUAUUGGCCAAUAUUAGCGAGUCCAGCUGCCAUUUAGUUGAGU-UGGCUCUUGGCAUUCGCCCGAUACAGUGC---UGCUCAGUUUU ((..((((....(((((((.(((.....))).)))))....((((((((((..((((...........-))))..)))).))))))..))....))))---...))...... ( -31.70) >DroEre_CAF1 3237 108 + 1 GAUUGCGCGAAUUUGUUGGCCUGGAAUAUUGGCCAAUAUUCGCGAGUCCAGCUGCCAUUUAGUGGAGU-UGGCUCUUGGCAUUCAGCCGAUACAGAGC---UGCUCGGUUUU ((.(((((((((..(((((((.........)))))))))))))(((.((((((.((((...)))))))-))))))...))).))((((((..((....---)).)))))).. ( -44.80) >DroYak_CAF1 8884 94 + 1 GAUUGCGCGAAUUUGUUGGGCAGGAAUAUUGGCCAAUAUACGCGAGUCCAGCUGCCAUUCAGUUGAGU-UGGCUCUUGGCAUUCG-----------------GCUCAGUUUU (((((.((.....((((((.(((.....))).))))))....(((((((((..(((((((....))).-))))..)))).)))))-----------------)).))))).. ( -32.20) >consensus GAUUGCGCGAAUUUGUUGGGCAGGAAUAUUGGCCAAUAUUCGCGAGUCCAGCUGCCAUUUAGUUGAGU_UGGCUCUUGGCAUUCGGCCGAUACAGUGC___UGCUCAGUUUU ....((((((((..(((((.(((.....))).)))))))))))((((((((..((((............))))..)))).))))..................))........ (-25.67 = -26.43 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:59 2006