| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 14,962,747 – 14,962,841 |
| Length | 94 |
| Max. P | 0.663468 |
| Location | 14,962,747 – 14,962,841 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 82.52 |
| Mean single sequence MFE | -28.30 |
| Consensus MFE | -18.76 |
| Energy contribution | -19.20 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.663468 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14962747 94 - 22224390 AUU-------------GCCAAUUGUGGCGGUGAAUGGGCCAUUUAAUGUCUUGGCUUUUUGCGGUUGCUUUGGCUUUGAUUUAUUUGAACUAGAGAUCAUGUUCGCU ...-------------(((((..(..((.(..((.((((((..........))))))))..).))..).)))))............((((..........))))... ( -27.00) >DroSec_CAF1 6745 99 - 1 AUUGUAA-------UGGCCAAUUGUGGCGGUGAAUGGGCCAUUUAAUGUCUUGGCUGUUUGCGGUUGCU-UGGCUUUGAUUUAUUUGAACAGCAGCUCAUGUUCGCU .......-------.((((((..(..((.(..(((((.(((..........))))))))..).))..))-)))))...........(((((........)))))... ( -28.50) >DroEre_CAF1 3068 97 - 1 AUUGUAA-------UGGCCAAUUGUGGCGGUGAAUGGG-CAUUUAAUGUCUUGGCUUUACGCGGUUACU-UGGCUGUGAUUUAUGUGAACUACAGCUCGUACUUGC- ...((((-------.((((((....((((.(((((...-.))))).))))))))))))))((((.(((.-.(((((((.(((....))).))))))).))).))))- ( -26.90) >DroYak_CAF1 8705 106 - 1 AUUGUAAUGGUUAAUGGCCAAUUGUGGCGGUGAAUGGGCCAUUUAAUGUCUUGGCUUGAAACGGUUGCU-UGGCUUUGAUUUAUAUGAACUACAGUUCGUAUUUGCC ...((((.((((((.((((((..(..((.((...(((((((..........)))))))..)).))..))-))))))))))).((((((((....)))))))))))). ( -30.80) >consensus AUUGUAA_______UGGCCAAUUGUGGCGGUGAAUGGGCCAUUUAAUGUCUUGGCUUUAUGCGGUUGCU_UGGCUUUGAUUUAUUUGAACUACAGCUCAUAUUCGCU ................((((...(((((.(((...((((((..........))))))..))).)))))..))))........((((((.(....).))))))..... (-18.76 = -19.20 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:57 2006