Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,636,516 – 1,636,676 |
Length | 160 |
Max. P | 0.815440 |
Location | 1,636,516 – 1,636,636 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 79.00 |
Mean single sequence MFE | -34.92 |
Consensus MFE | -22.53 |
Energy contribution | -23.23 |
Covariance contribution | 0.70 |
Combinations/Pair | 1.45 |
Mean z-score | -1.68 |
Structure conservation index | 0.65 |
SVM decision value | 0.58 |
SVM RNA-class probability | 0.790391 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1636516 120 + 22224390 CAGCUAAGGCGGCACUUGCUUCGUUAUGCAAUAUUUCCUACAGUCCAAUGGUGGUGCCACAGAAGAACGUACCCCUGCCAAUCGACGACAAGUCGUCAUCGAUGGAGUUGCCUCAGAUAC ...((.(((((((..((((........))))............((((.(((((((((...........)))))...))))...(((((....))))).....))))))))))).)).... ( -34.90) >DroVir_CAF1 2450 120 + 1 CCGCUAAAGCCGCGCUUGCAUCUUUGUGCAAUAUUUCUUAUAGUCCGAUGAUGGCGCCACAGAAGAAUGCGCCAUUACCAAUAGAUGAUAAGUCAUCAUCAAUGGAAUUACCGCAAAUAC ..((....)).(((.((((((....))))))............((((.(((((((((...........))))))))).)....((((((.....))))))...))).....)))...... ( -31.10) >DroGri_CAF1 2038 120 + 1 CCGCCAAGGCAGCGCUUGCCUCGCUGUGCAAUAUCUCAUAUAGUCCAAUGAUGGCACCGCAGAAGAACGCACCGUUGCCCAUUGAUGACAAAUCGUCGUCAAUGGAAUUGCCGCAAAUAC ..((...(((((((..(((((((.((..(.((((...)))).)..)).))).)))).)))........(((....)))(((((((((((.....)))))))))))...))))))...... ( -38.40) >DroWil_CAF1 16986 120 + 1 CUGCCAAGGCCGCACUUGCCUCGCUGUGCAAUAUCUCGUAUAGUCCAAUGAUGGCACCCCAAAAGAAUGUGCCGCUGCCCAUUGAUGAUAAGACAUCGUCAAUGGAAUUGCCACAAAUCC .(((((((((.......)))).(((((((........))))))).......)))))...........((((..((...(((((((((((.....)))))))))))....))))))..... ( -35.40) >DroMoj_CAF1 3328 120 + 1 CCGCGAAGGCUGCUUUAGCCUCUCUGUGCAAUAUAUCUUACAGUCCGAUGAUGGCACCACAGAAAAAUGCGCCGUUACCCAUUGACGAGAAGUCAUCGUCGAUGGAAUUACCACAAAUAC .((((.((((((...)))))).((((((.....((((............))))....))))))....)))).......((((((((((.......))))))))))............... ( -33.30) >DroAna_CAF1 1301 120 + 1 CUGCCAAAGCGGCUCUGGCCUCGCUCUGCAACAUCUCGUAUAGCCCGAUGGUGGUGCCACAAAAGAACGUGCCACUGCCCAUCGACGACAAGUCAUCGUCCAUGGAACUGCCCCAGAUCC ..(((.....)))(((((....(((.(((........))).)))(((((((..(((.(((........))).)))..).))))(((((.......)))))...)).......)))))... ( -36.40) >consensus CCGCCAAGGCCGCACUUGCCUCGCUGUGCAAUAUCUCGUAUAGUCCAAUGAUGGCACCACAGAAGAACGCGCCGCUGCCCAUUGACGACAAGUCAUCGUCAAUGGAAUUGCCACAAAUAC ..((....)).((....))........(((((................(((((((((...........))))))))).(((((((((((.....))))))))))).)))))......... (-22.53 = -23.23 + 0.70)
Location | 1,636,556 – 1,636,676 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 79.94 |
Mean single sequence MFE | -36.88 |
Consensus MFE | -23.68 |
Energy contribution | -23.93 |
Covariance contribution | 0.26 |
Combinations/Pair | 1.52 |
Mean z-score | -1.89 |
Structure conservation index | 0.64 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.815440 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1636556 120 + 22224390 CAGUCCAAUGGUGGUGCCACAGAAGAACGUACCCCUGCCAAUCGACGACAAGUCGUCAUCGAUGGAGUUGCCUCAGAUACACGCGGAUACGAUUGGUCGGUUGGUCUUAGAAAAGUUCAU .((.(((((((.(((((...........))))))).((((((((((((....)))))(((...((.....))...)))............)))))))..))))).))............. ( -33.30) >DroVir_CAF1 2490 120 + 1 UAGUCCGAUGAUGGCGCCACAGAAGAAUGCGCCAUUACCAAUAGAUGAUAAGUCAUCAUCAAUGGAAUUACCGCAAAUACAUGCGGACACUAUCGGACGGUUAGUGUUGGAAAAGUUCAU ..(((((((((((((((...........)))))))).(((...((((((.....))))))..))).....(((((......))))).....)))))))...................... ( -38.20) >DroGri_CAF1 2078 120 + 1 UAGUCCAAUGAUGGCACCGCAGAAGAACGCACCGUUGCCCAUUGAUGACAAAUCGUCGUCAAUGGAAUUGCCGCAAAUACACGCAGAUACUAUCGGACGCUUAGUGUUGGAGAAAUUCAU ..((((......((((..((((..(......)..))))(((((((((((.....)))))))))))...))))((........))..........)))).........((((....)))). ( -36.10) >DroWil_CAF1 17026 120 + 1 UAGUCCAAUGAUGGCACCCCAAAAGAAUGUGCCGCUGCCCAUUGAUGAUAAGACAUCGUCAAUGGAAUUGCCACAAAUCCAUGCGGACACAAUUGGUCGCCUGGUAUUGGAGAAAUUCAU ...(((((((..(((...((((.....((((((((...(((((((((((.....)))))))))))..(((...)))......)))).)))).))))..)))...)))))))......... ( -39.30) >DroMoj_CAF1 3368 120 + 1 CAGUCCGAUGAUGGCACCACAGAAAAAUGCGCCGUUACCCAUUGACGAGAAGUCAUCGUCGAUGGAAUUACCACAAAUACAUGCGGAUACCAUUGGACGGUUGGUAUUGGAAAAAUUCAU ..(((((((((((((.(...........).)))))...((((((((((.......)))))))))).....((.((......)).))....))))))))...................... ( -33.70) >DroAna_CAF1 1341 120 + 1 UAGCCCGAUGGUGGUGCCACAAAAGAACGUGCCACUGCCCAUCGACGACAAGUCAUCGUCCAUGGAACUGCCCCAGAUCCAUGCGGACACCAUUGGCCGUCUGGUGUUGGAGAAGUUCAU ......(((((..(((.(((........))).)))..).))))(((((.......)))))....(((((.(.((((..(((.((((.((....)).)))).)))..)))).).))))).. ( -40.70) >consensus UAGUCCAAUGAUGGCACCACAGAAGAACGCGCCGCUGCCCAUUGACGACAAGUCAUCGUCAAUGGAAUUGCCACAAAUACAUGCGGACACCAUUGGACGGUUGGUGUUGGAAAAAUUCAU ..(.(((((((((((((...........))))))))..(((((((((((.....)))))))))))..........................))))).)...................... (-23.68 = -23.93 + 0.26)
Location | 1,636,556 – 1,636,676 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 79.94 |
Mean single sequence MFE | -37.32 |
Consensus MFE | -23.65 |
Energy contribution | -22.85 |
Covariance contribution | -0.80 |
Combinations/Pair | 1.59 |
Mean z-score | -1.71 |
Structure conservation index | 0.63 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.726081 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1636556 120 - 22224390 AUGAACUUUUCUAAGACCAACCGACCAAUCGUAUCCGCGUGUAUCUGAGGCAACUCCAUCGAUGACGACUUGUCGUCGAUUGGCAGGGGUACGUUCUUCUGUGGCACCACCAUUGGACUG ........................((((((((((((.(.(((....(((....))).(((((((((.....)))))))))..))))))))))).......(((....))).))))).... ( -33.60) >DroVir_CAF1 2490 120 - 1 AUGAACUUUUCCAACACUAACCGUCCGAUAGUGUCCGCAUGUAUUUGCGGUAAUUCCAUUGAUGAUGACUUAUCAUCUAUUGGUAAUGGCGCAUUCUUCUGUGGCGCCAUCAUCGGACUA ......................(((((((.....(((((......))))).....(((..(((((((...)))))))...)))..(((((((...(....)..))))))).))))))).. ( -38.30) >DroGri_CAF1 2078 120 - 1 AUGAAUUUCUCCAACACUAAGCGUCCGAUAGUAUCUGCGUGUAUUUGCGGCAAUUCCAUUGACGACGAUUUGUCAUCAAUGGGCAACGGUGCGUUCUUCUGCGGUGCCAUCAUUGGACUA ......................(((((((.......(((......)))((((...(((((((.(((.....))).)))))))(((..((......))..)))..))))...))))))).. ( -33.10) >DroWil_CAF1 17026 120 - 1 AUGAAUUUCUCCAAUACCAGGCGACCAAUUGUGUCCGCAUGGAUUUGUGGCAAUUCCAUUGACGAUGUCUUAUCAUCAAUGGGCAGCGGCACAUUCUUUUGGGGUGCCAUCAUUGGACUA .........((((((....((((.((((.((((((((((......))))((...((((((((.((((...)))).))))))))..)))))))).....))))..))))...))))))... ( -38.60) >DroMoj_CAF1 3368 120 - 1 AUGAAUUUUUCCAAUACCAACCGUCCAAUGGUAUCCGCAUGUAUUUGUGGUAAUUCCAUCGACGAUGACUUCUCGUCAAUGGGUAACGGCGCAUUUUUCUGUGGUGCCAUCAUCGGACUG ......................((((.(((((..(((((......)))))....(((((.(((((.(....)))))).)))))....(((((((......)).)))))))))).)))).. ( -34.70) >DroAna_CAF1 1341 120 - 1 AUGAACUUCUCCAACACCAGACGGCCAAUGGUGUCCGCAUGGAUCUGGGGCAGUUCCAUGGACGAUGACUUGUCGUCGAUGGGCAGUGGCACGUUCUUUUGUGGCACCACCAUCGGGCUA ..(((((.(((((...(((..(((.((....)).)))..)))...))))).)))))....((((((.....))))))(((((...(((.((((......)))).)))..)))))...... ( -45.60) >consensus AUGAACUUCUCCAACACCAACCGUCCAAUAGUAUCCGCAUGUAUUUGCGGCAAUUCCAUUGACGAUGACUUGUCAUCAAUGGGCAACGGCACAUUCUUCUGUGGCGCCAUCAUCGGACUA ........................(((((.(((.(((((......((((.(...(((((.((((((.....)))))).)))))....).))))......))))))))....))))).... (-23.65 = -22.85 + -0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:22 2006