Locus 5769

Sequence ID X_DroMel_CAF1
Location 14,961,478 – 14,961,582
Length 104
Max. P 0.942505
window9361

overview

Window 1

Location 14,961,478 – 14,961,582
Length 104
Sequences 4
Columns 119
Reading direction forward
Mean pairwise identity 82.22
Mean single sequence MFE -31.97
Consensus MFE -23.27
Energy contribution -23.27
Covariance contribution 0.00
Combinations/Pair 1.10
Mean z-score -2.22
Structure conservation index 0.73
SVM decision value 1.33
SVM RNA-class probability 0.942505
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14961478 104 + 22224390
GCCAAUAACACUUCCUCGC---G-------AC---CACUCAAAAGUGCCAAUGCGUAACGAAUAUCGUUUCGCAGCAGCGCCAAUUCUGAGUGUUAUGUCCGAUGAAGAUGUUCCUC--
......((((((((.(((.---(-------((---((((((.((((((...((((.((((.....)))).))))...))))...)).))))))....)))))).)))).))))....-- ( -33.90)
>DroSec_CAF1 5525 106 + 1
GCCAAUAACACUUCCUCGC---A-------AG---CACUCGAAAGUGCCAAUGCGUAACGAAUAUCGUUUCGCAGCAGCGCCAAUUCUGAGUGUUAUGUCCGAUGAAGAUGUUUCUCCC
......((((((((.((((---(-------((---((((((((.((((...((((.((((.....)))).))))...))))...))).))))))).))..))).)))).))))...... ( -33.80)
>DroEre_CAF1 1850 114 + 1
GCCAAUAGCACUUCCUCGACUCGAAGUGCCUGCUCCACUCGAUAGUUCCAAUGCGUAACGAAUGCCGCUUCGUA---GCGCCAAUUCUGAGUGUUAUGUCCGAUGCAGAUGCUCCUU--
((.....(((((((........)))))))(((((((((((((....))....((((.(((((......))))).---)))).......)))))........)).))))..)).....-- ( -30.30)
>DroYak_CAF1 7484 111 + 1
GCCAAUAACACUUCCUCGACUCGAAGUGCCUA---CACUCGAAAGUGCCAAUGCGUAACGAAUAUCGUUUCGCA---GCGCCAAUUCUGAGUGUUAUAUCCGAUGAAGAUGUUCCUC--
......((((((((.(((((.....))....(---((((((((.((((...((((.((((.....)))).))))---))))...))).))))))......))).)))).))))....-- ( -29.90)
>consensus
GCCAAUAACACUUCCUCGA___G_______AG___CACUCGAAAGUGCCAAUGCGUAACGAAUAUCGUUUCGCA___GCGCCAAUUCUGAGUGUUAUGUCCGAUGAAGAUGUUCCUC__
......((((((((.(((.................((((((...((((...((((.((((.....)))).))))...))))......)))))).......))).)))).))))...... (-23.27 = -23.27 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:56 2006