| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 14,956,886 – 14,956,978 |
| Length | 92 |
| Max. P | 0.819192 |
| Location | 14,956,886 – 14,956,978 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 92.45 |
| Mean single sequence MFE | -23.40 |
| Consensus MFE | -20.61 |
| Energy contribution | -20.30 |
| Covariance contribution | -0.31 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.88 |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.819192 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14956886 92 - 22224390 CACCAAACGAACCGGUUCUCCCCGGGAAAACAAAGAGAUGUUUCCAAAUGGUGUAUAUCGUAGUAGUAUACAGUAUGGUGUCCAACAUGCAC (((((.((...((((......))))...........(((((..((....))...)))))(((......))).)).)))))............ ( -21.00) >DroSec_CAF1 1036 89 - 1 CACCAAACGAACCGGUUCUCCCCGGGAAAACAAAGAGAUGUUACCAAAUGGUGUAUAUCGUC---GUAUACAGUAUGGUGUCCAACAUGCAC (((((.((...((((......)))).........(((((((((((....)))).))))).))---.......)).)))))............ ( -23.20) >DroSim_CAF1 3815 89 - 1 CACCAAACGAACCGGUUCUCCCCGGGAAAACAAAGAGAUGUUACCAAAUGGUGUAUAUCGUU---GUAUACAGUAUGGUGUCCAACAUGCAC (((((.((...((((......))))....((((...(((((((((....)))).))))).))---)).....)).)))))............ ( -25.10) >DroYak_CAF1 3232 88 - 1 CACCACACGAACCGGUUCUCCCCGGGAAAACAAAGAGUUGUUACCAAAUGGUGUAUAGUA-A---GCAUACAGUGUGGUGUCCAACAUGCAC ((((((((...((((......))))...(((((....)))))(((....)))((((.(..-.---.))))).))))))))............ ( -24.30) >consensus CACCAAACGAACCGGUUCUCCCCGGGAAAACAAAGAGAUGUUACCAAAUGGUGUAUAUCGUA___GUAUACAGUAUGGUGUCCAACAUGCAC (((((.((...((((......))))...........(((((((((....)))).))))).............)).)))))............ (-20.61 = -20.30 + -0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:55 2006