Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 14,956,587 – 14,956,706 |
Length | 119 |
Max. P | 0.562049 |
Location | 14,956,587 – 14,956,706 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.28 |
Mean single sequence MFE | -23.97 |
Consensus MFE | -18.33 |
Energy contribution | -17.57 |
Covariance contribution | -0.75 |
Combinations/Pair | 1.28 |
Mean z-score | -1.46 |
Structure conservation index | 0.76 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.562049 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14956587 119 - 22224390 AUAGUAUGAGGAAAAUGCAGAGUCAGCAAAGAACGAGCACUUGGAAAACAAGUGAUUUGUUUUUUUUUUAGAAUGCAUAAAAAAGUGGCAAAGCA-GAGAGUGCAUAAUGUCAAUGAAAC ..............(((((........((((((((((((((((.....)))))).))))))))))........))))).......(((((..(((-.....)))....)))))....... ( -25.99) >DroSec_CAF1 737 119 - 1 AUAGUGUGAGCAAAAUGCAGAGUCAGCGAAGAACAAGCGCUUGGAAAACAAGUGAUUUGGUUU-UUUUUAGAACGCAUAAAAAAGUGGCAAAGCGUAAGAAUGCAUAAUGUCAAUGAAAC ...(((((.((.....))....((...(((((((...((((((.....)))))).....))))-)))...)).))))).......(((((..((((....))))....)))))....... ( -24.60) >DroSim_CAF1 3516 119 - 1 AUAGUGUGAGCAAAAUGCAGAGUCAGCGAAGAACGAGCGCUUGGAAAACAAGUGAUUUGGUUU-UUUUUAGAACGCGUAAAAAAGUGGCAAAGCGUAAGAGUGCAUAAUGUCAAUGAAAC ......(((.((..(((((......(((((((((.(.((((((.....))))))...).))))-)))......(((........)))))....(....)..)))))..)))))....... ( -23.50) >DroYak_CAF1 2935 116 - 1 AUAGUGUGCAGAAAAUGCAGAGUCAGUGAAGAACGAGCUGCUGGAAAACAAGUGAUUUGGUUA---UUUAGAACGCGUAAAAAAGUGGCAAAGCAG-AAAGUGCAUAAUGCCAAUGGGAC ....((((((.....(((.......((.....))..((..((.........(((.(((((...---.))))).))).......))..))...))).-....))))))...((....)).. ( -21.79) >consensus AUAGUGUGAGCAAAAUGCAGAGUCAGCGAAGAACGAGCGCUUGGAAAACAAGUGAUUUGGUUU_UUUUUAGAACGCAUAAAAAAGUGGCAAAGCAUAAGAGUGCAUAAUGUCAAUGAAAC ...((((........(((.......))).....((((((((((.....)))))).)))).............)))).........(((((..(((......)))....)))))....... (-18.33 = -17.57 + -0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:55 2006