Locus 5766

Sequence ID X_DroMel_CAF1
Location 14,955,453 – 14,955,562
Length 109
Max. P 0.972247
window9358

overview

Window 8

Location 14,955,453 – 14,955,562
Length 109
Sequences 3
Columns 114
Reading direction reverse
Mean pairwise identity 90.50
Mean single sequence MFE -36.13
Consensus MFE -32.93
Energy contribution -32.60
Covariance contribution -0.33
Combinations/Pair 1.10
Mean z-score -2.78
Structure conservation index 0.91
SVM decision value 1.69
SVM RNA-class probability 0.972247
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14955453 109 - 22224390
GCUCGAAGGGCAAUGUAGCUUGGCUAAUUCCAACUCGGAAUCGGAUUGGGAUUGGUUUUCAGACAGGCCCAAA-----AGAAAAAAGUGGCCACGUCACCGGACAUCAAAUCCA
(..((..((((..(((.....((((((((((((..((....))..)))))))))))).....))).))))...-----........(((((...)))))))..).......... ( -33.70)
>DroSim_CAF1 1852 105 - 1
GCUCGAAGGGCACUGUAGCUUGGCUAAUUCCAACUCGGAAUCGGAUUGGGAUUGGUUUUUAGCCAGGCCCAAA---------AAACGUGGCCACGUCACCGGACAUCAAAUCCA
(..((..((((.(((..(((.((((((((((((..((....))..))))))))))))...))))))))))...---------....(((((...)))))))..).......... ( -37.80)
>DroYak_CAF1 1869 114 - 1
GCUCGAAGGGCAAUGUAGCUUGGCUAAUUCCAACUCGGAAUCGAAUUGGGAUUGGCUUUUAGCCAGGCCCAAAAAAAAAGAAAAAAGUGACCACGUCACCGGACAUCAAAUCCA
(..((..((((......(((.((((((((((((.(((....))).))))))))))))...)))...))))................(((((...)))))))..).......... ( -36.90)
>consensus
GCUCGAAGGGCAAUGUAGCUUGGCUAAUUCCAACUCGGAAUCGGAUUGGGAUUGGUUUUUAGCCAGGCCCAAA_____AGAAAAAAGUGGCCACGUCACCGGACAUCAAAUCCA
(..((..((((......(((.((((((((((((.(((....))).))))))))))))...)))...))))................(((((...)))))))..).......... (-32.93 = -32.60 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:53 2006