| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 14,954,910 – 14,955,005 |
| Length | 95 |
| Max. P | 0.569618 |
| Location | 14,954,910 – 14,955,005 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 92.63 |
| Mean single sequence MFE | -23.07 |
| Consensus MFE | -19.30 |
| Energy contribution | -20.30 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.569618 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14954910 95 + 22224390 UCAUGCUCAAAAACUGAUUGACAUCUUAGGCUUUUUAAACAUAAAUAGCUGGAGGGUACAUUUUAAUGUGUCGCGUGUCAGUUUUUUGUAAAGGA ...(((..(((((((((((((((((((.((((.((((....)))).))))..)))))((((....))))))))...)))))))))).)))..... ( -22.90) >DroSim_CAF1 1315 95 + 1 UCAUGCUCAAAAACUGAUUGACAUCUUAGGCUUUUUUAACAUAAAUAGCUAGAGGGUACAUUUUAAUGUGUCGCGUGUCAGUUUUUUGAAUAGGA ......((((((...((((((((((((.((((.(((......))).)))).)))(..((((....))))..)..)))))))))))))))...... ( -22.60) >DroYak_CAF1 1326 95 + 1 CCAUAUUCAAAAACUGAUUGACAUCUUAGGCAUUUUAAACAUAAAUAGCUAGAGGGUACAUUUUUAUGUGUCGCGUGUCAGUAUUUUGAAGAGGA ((...(((((((....(((((((((((.(((((((.......)))).))).)))(..((((....))))..)..)))))))).)))))))..)). ( -23.70) >consensus UCAUGCUCAAAAACUGAUUGACAUCUUAGGCUUUUUAAACAUAAAUAGCUAGAGGGUACAUUUUAAUGUGUCGCGUGUCAGUUUUUUGAAAAGGA ......((((((...((((((((((((.((((.(((......))).)))).)))(..((((....))))..)..)))))))))))))))...... (-19.30 = -20.30 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:52 2006