Locus 5763

Sequence ID X_DroMel_CAF1
Location 14,950,514 – 14,950,614
Length 100
Max. P 0.972185
window9354

overview

Window 4

Location 14,950,514 – 14,950,614
Length 100
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 91.28
Mean single sequence MFE -29.12
Consensus MFE -25.24
Energy contribution -25.36
Covariance contribution 0.12
Combinations/Pair 1.14
Mean z-score -1.81
Structure conservation index 0.87
SVM decision value 1.69
SVM RNA-class probability 0.972185
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14950514 100 - 22224390
CCGCCUAUCCGCCUAUCGCCAAUCGGAGGGCAUCCAGAGUGCCCCACCUUGGCGAUCUGCUAUCUGUUGAGACCCAGAGCUCAGACCAUAUACCACAUAC
..((......((..((((((((..(..((((((.....))))))..).))))))))..))..((((........)))))).................... ( -28.70)
>DroSec_CAF1 7598 92 - 1
CCGC--------CUAUCGCCAAUCGGAGGGCAUCCAGAGUGCCCCACCUUGGCGAUCUGCUAUCUGUCGAGACCCAGAGCUCGGACCAUAUACCACAUAC
..((--------..((((((((..(..((((((.....))))))..).))))))))..))......(((((........)))))................ ( -29.40)
>DroSim_CAF1 12390 92 - 1
CCGC--------CUAUCGCCAAUCGGAGGGCAUCCAGAGUGCCCCACCUUGGCGAUCUGCUAUCUGUCGAGACCCAGAGCUCGGACCAUAUACCACAUAC
..((--------..((((((((..(..((((((.....))))))..).))))))))..))......(((((........)))))................ ( -29.40)
>DroEre_CAF1 6734 92 - 1
CCGG--------CUAUCGCCAAUCGGAGGGCAUCCAGCGUGCCCCACCUUGGUGAUCUGCUAGCUGUAGAGACCCGAAGCUCGAACCAUAUACAUCAUAC
.(((--------((.(((((((..(..((((((.....))))))..).)))))))(((((.....))))).......))).))................. ( -28.70)
>DroYak_CAF1 8912 92 - 1
CCGC--------CUAUCGCCAAUCGGAGGGCAUCCAGAGUGCCCCACCUUGGCGAUCUGCUAUCUGUCGAGACCCAGAGCUCGGACCAUAUACCACAUAU
..((--------..((((((((..(..((((((.....))))))..).))))))))..))......(((((........)))))................ ( -29.40)
>consensus
CCGC________CUAUCGCCAAUCGGAGGGCAUCCAGAGUGCCCCACCUUGGCGAUCUGCUAUCUGUCGAGACCCAGAGCUCGGACCAUAUACCACAUAC
...............(((((((..(..((((((.....))))))..).)))))))((((...((((........))))...))))............... (-25.24 = -25.36 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:50 2006