Locus 5761

Sequence ID X_DroMel_CAF1
Location 14,943,660 – 14,943,753
Length 93
Max. P 0.542215
window9350

overview

Window 0

Location 14,943,660 – 14,943,753
Length 93
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 83.39
Mean single sequence MFE -22.08
Consensus MFE -13.28
Energy contribution -13.83
Covariance contribution 0.56
Combinations/Pair 1.12
Mean z-score -2.45
Structure conservation index 0.60
SVM decision value 0.02
SVM RNA-class probability 0.542215
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14943660 93 - 22224390
UUAGGUUUGGAAACAAUC--GCAAAG-CGCACUACUUAUACAGU---ACUUACUGUACUCCUCCAGUACAAAAAUGCCACCCUUCUGGGUGAAGCACUU
...((((.(....)))))--((....-.(((.((((.....)))---).....((((((.....))))))....)))(((((....)))))..)).... ( -22.50)
>DroSec_CAF1 28 92 - 1
UUUGGUUUGGAAACAAUC--GCA-AG-AGUACAACUUAUACAGU---ACUUACUGUACUCCUCCAGUACAAAAAUGCCACCCUUCUGGGUGAAGCACUU
((((..(((((.....((--...-.)-)..........((((((---....))))))....)))))..))))..((((((((....)))))..)))... ( -25.60)
>DroSim_CAF1 2183 92 - 1
UUUGGUUUGGAAACAAUC--GCA-AG-AGUACUACUUAUACAGU---ACUUACUGUACUCCUCCAGUACAAAAAUGCCACCCUUCUGGGUGAAGCACUU
.((((.(((....))).)--.))-)(-((((((........)))---))))..((((((.....))))))....((((((((....)))))..)))... ( -26.30)
>DroEre_CAF1 29 92 - 1
UUAAGUUUGGAAACAAGU--UCA-AG-GACACUACAUAUACAGU---ACUUACUGUACUCCUCCAGUACAAAAAUGCCACCCUUUUGGGUGAAGCACUU
....(((((((.....((--(..-..-)))........((((((---....))))))....))))).)).....((((((((....)))))..)))... ( -22.70)
>DroWil_CAF1 8081 94 - 1
UAAGAC---AAAACAUUAAAAUA-AA-AACACUGAUUAAGCAUUUUCACUUACUGUACUCCUCCAGGACAAAGAUGCCGCCUUUCUGUGUAAAGCAUUU
......---..............-..-.((((.((....(((((((......(((........)))....)))))))......)).))))......... ( -11.40)
>DroYak_CAF1 2281 93 - 1
UUAAGUGUGGAAACAAGC--ACA-AGGGGCACUACUUAUACAGU---ACUUACUGUACUCCUCCAGUACAAAAAUGCCACCCUUCUGGGUGAAGCACUU
..(((((((....)..((--...-(((((.........((((((---....)))))))))))...))..........(((((....)))))..)))))) ( -24.00)
>consensus
UUAGGUUUGGAAACAAUC__GCA_AG_AGCACUACUUAUACAGU___ACUUACUGUACUCCUCCAGUACAAAAAUGCCACCCUUCUGGGUGAAGCACUU
.......((....))......................................((((((.....))))))....((((((((....)))))..)))... (-13.28 = -13.83 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:46 2006