Locus 5760

Sequence ID	X_DroMel_CAF1
Location	14,942,015 – 14,942,118
Length	103
Max. P	0.703305

overview

Window 9

Location	14,942,015 – 14,942,118
Length	103
Sequences	3
Columns	103
Reading direction	forward
Mean pairwise identity	89.64
Mean single sequence MFE	-13.27
Consensus MFE	-11.15
Energy contribution	-11.27
Covariance contribution	0.11
Combinations/Pair	1.06
Mean z-score	-2.07
Structure conservation index	0.84
SVM decision value	0.36
SVM RNA-class probability	0.703305
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14942015 103 + 22224390
ACUGCUGGAAUUUUCUUUUCAAUAUCUAUAAGCUAUUGCUAAAAGUCUGGCUUUCCCGCCCUUCUUUUCCCCAUCUCUCGCUCUUUAUCUAUUUCUAAUUUAA
...((.(((.....................(((....)))(((((...(((......)))...))))).......))).))...................... ( -12.20)
>DroSim_CAF1 544 103 + 1
ACUGCUGGAAUUUUCUUUUCAAUAACUAUAAGCUAUUGCUAAAAGUCUGGCUUUUCCGCCCAUCUUUUCCCCAUCUCUCGCUCUUUAUCUAUUUCUAAUUUAC
...((.(((.....................(((....)))(((((...(((......)))...))))).......))).))...................... ( -12.20)
>DroYak_CAF1 611 103 + 1
ACUGCUGGCAUUUUCUUUUCAAUAUCUGUAAGCUAUUGCUAGAAGUCUGGCUUUCCUGCCCUACUUUUCCCAUUCUCUCGCAAUCUAUAUUUUUCUAAUUUAA
..((((((((.(..(((..((.....)).)))..).)))))(((((..(((......)))..)))))............)))..................... ( -15.40)
>consensus
ACUGCUGGAAUUUUCUUUUCAAUAUCUAUAAGCUAUUGCUAAAAGUCUGGCUUUCCCGCCCUUCUUUUCCCCAUCUCUCGCUCUUUAUCUAUUUCUAAUUUAA
...((.(((.....................(((....)))(((((...(((......)))...))))).......))).))...................... (-11.15 = -11.27 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:45 2006