Locus 5754

Sequence ID X_DroMel_CAF1
Location 14,920,931 – 14,921,050
Length 119
Max. P 0.858210
window9337

overview

Window 7

Location 14,920,931 – 14,921,050
Length 119
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 74.86
Mean single sequence MFE -36.39
Consensus MFE -13.74
Energy contribution -14.38
Covariance contribution 0.64
Combinations/Pair 1.27
Mean z-score -2.33
Structure conservation index 0.38
SVM decision value 0.82
SVM RNA-class probability 0.858210
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14920931 119 - 22224390
GAGGAAGAAGAGUCCUCCGGCUCAU-CUUCGUCUUCAUUCACCACAUCGAAAUCGAGCAGAGGCUUGCCGACCAGAGCAAUCUCAUCGAUUUUGUGGUGAAUCUUGGUUAUCUUGCCAUC
((.(((((.(((((....))))).)-)))).))...((((((((((...(((((((...((((.(((((.....).)))))))).)))))))))))))))))..((((......)))).. ( -46.70)
>DroPse_CAF1 27419 115 - 1
-AGGAUUCAGUGCUAUU---CUCGU-CACCCUCCUCGUCGAGCACAUCAAAGUCCAGCAGGGGCUUGCCCACCAAUGCGAUCUCAUCGAUGCUGUGGUGGAUUUUAGUGAUUUUGCCAUC
-.((.....(((((...---..((.-.........))...)))))..((((((((.((((....))))((((((..((.(((.....)))))..))))))......).)))))))))... ( -30.60)
>DroSim_CAF1 19698 120 - 1
GAGGAAGAAGAGUCCUCCGCCUCAUUCUUCCUCUUCAUUCACCACAUCGAAAUCGAGCAGAGGCUUGCCGACCAGCGCAAUCUCAUCGAUUUUGUGGUGAAUCUUGGUUAUCUUCCCAUC
((((((((((((........))).)))))))))...((((((((((...(((((((...((((.(((((.....).)))))))).)))))))))))))))))..(((........))).. ( -45.00)
>DroYak_CAF1 18562 115 - 1
----AGGAAGAGUCCUCUGCCUCAU-CUUCCUCUUCAUCCACCACAUCAAAAUCGAGGAGAGGCUUGCCGACCAGCGCAAUCUCAUCGAUUUUAUGGUGAAUCUUGGUUAUCUUGCCAUC
----(((((((.............)-)))))).......(((((....((((((((.((((...(((((.....).)))))))).)))))))).))))).....((((......)))).. ( -32.22)
>DroMoj_CAF1 29337 112 - 1
-------UGCUGCCAUCAUCUUCUU-CCUCCUCCGCAUCCGCCACCUCGAACUCGAGCAGUGGUUUGCCCACCAGAGCCAGCUCAUCGAUGUUGUGGUAGAUGCGCGUAAUCUUGCCAUC
-------..(((((((((((.....-........(((...(((((((((....))))..))))).)))......(((....)))...))))..)))))))(((.(((......)))))). ( -33.20)
>DroPer_CAF1 28287 115 - 1
-AGGAUUCAGUGCUAUU---CUCGU-CACCCUCCUCGUCGAGCACAUCAAAGUCCAGCAGGGGCUUGCCCACCAAUGCGAUCUCAUCGAUGCUGUGGUGGAUUUUAGUGAUUUUGCCAUC
-.((.....(((((...---..((.-.........))...)))))..((((((((.((((....))))((((((..((.(((.....)))))..))))))......).)))))))))... ( -30.60)
>consensus
_AGGAAGAAGAGCCAUC_GCCUCAU_CUUCCUCCUCAUCCACCACAUCAAAAUCGAGCAGAGGCUUGCCCACCAGAGCAAUCUCAUCGAUGUUGUGGUGAAUCUUGGUUAUCUUGCCAUC
....................................(((.((((((.....(((((...((((.((((........)))))))).)))))..)))))).))).................. (-13.74 = -14.38 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:34 2006