Locus 5753

Sequence ID X_DroMel_CAF1
Location 14,914,498 – 14,914,614
Length 116
Max. P 0.865340
window9336

overview

Window 6

Location 14,914,498 – 14,914,614
Length 116
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 79.11
Mean single sequence MFE -28.03
Consensus MFE -14.15
Energy contribution -14.03
Covariance contribution -0.12
Combinations/Pair 1.39
Mean z-score -2.21
Structure conservation index 0.50
SVM decision value 0.85
SVM RNA-class probability 0.865340
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14914498 116 + 22224390
ACAAUAUCGUUUGCGAGAAUUGGUGGUUUCAGGUGCUACCUUAGUAUCUUGGAACCGAUCUUAUGUAACUUGCCUCCUGAGGGAUAUAUAUAUAUAAAUAAAUCUC----UAUGGGAAAU
.((((.(((....)))..)))).(((((((((((((((...))))))).)))))))).................(((((((((((.(((........))).)))))----).)))))... ( -30.10)
>DroSec_CAF1 13009 108 + 1
ACAAUAUCGUUUGCAAGAAAUU----UCCCAGGUGGUACCUCAGUAUCUUGGAACCAAUCA-AU-CA--AUGCCUCCUAAGCUAUAUAUCUCCAGGGGGAUAUAUA----UAUGGGAAAU
...................(((----(((((((.((((..........(((....)))...-..-..--.)))).)))....((((((((((....))))))))))----...))))))) ( -27.27)
>DroSim_CAF1 13278 112 + 1
ACAAUAUCGUUUGCAAGAAAUU----UCCCAGGUGGCAGCUCAGUAUCUUGGAACCAAUCUUAUGUAACUUGCCUCUUGAGCUAUAUAUCCCCAGAGGGAUAUAUA----UAUGGGAAAU
...................(((----(((((((.(((((....(((..(((....)))...))).....))))).)))....((((((((((....))))))))))----...))))))) ( -30.30)
>DroEre_CAF1 13067 115 + 1
ACAAUAUCGUUUGCGAGAA-UU----UCCUAUGUGCAACCUCAGUAUCUUGGUACCAAUCUUAUAUAACUUGCCUCUCCAGCUAUAUAUCUAAACAGGGAUAUAUAUUUCUAUGGGAAAU
......(((....)))..(-((----(((((((.((((.....(((..(((....)))...))).....)))).........(((((((((......)))))))))....)))))))))) ( -21.60)
>DroYak_CAF1 12636 115 + 1
ACAAUAUCGUUUGCGAGAA-UU----UCCUAGGUGCAACCUCAAUAUCUUGGGAGCACUCUUAUAUAACUUGCCUCCAGAGCUAUAUAUCUCUACAGGGAUAUAUAUUUCUAUGGGAAAC
......(((....)))...-((----((((((((((..((..........))..)))))..................((((.((((((((((....)))))))))).)))).))))))). ( -30.90)
>consensus
ACAAUAUCGUUUGCGAGAA_UU____UCCCAGGUGCAACCUCAGUAUCUUGGAACCAAUCUUAUAUAACUUGCCUCCUGAGCUAUAUAUCUCCACAGGGAUAUAUA____UAUGGGAAAU
............(((((.........(((.(((((.........))))).)))...............))))).(((((...((((((((((....))))))))))......)))))... (-14.15 = -14.03 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:34 2006