Locus 5752

Sequence ID X_DroMel_CAF1
Location 14,903,831 – 14,903,932
Length 101
Max. P 0.651358
window9335

overview

Window 5

Location 14,903,831 – 14,903,932
Length 101
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 84.79
Mean single sequence MFE -28.05
Consensus MFE -18.96
Energy contribution -21.44
Covariance contribution 2.48
Combinations/Pair 1.11
Mean z-score -1.89
Structure conservation index 0.68
SVM decision value 0.25
SVM RNA-class probability 0.651358
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14903831 101 + 22224390
UCUUUACACACGGAGGCCCCCCCCCCUUUGGAAGUGUACACACCUUGCGGUUGGCAUUUCCAUUACAUUGGGGGC---UGUCCAAUGACGAUCGUUACCUCCAU-----
...........((((((((((.......(((((((((.((.(((....)))))))))))))).......))))))---((((....))))........))))..----- ( -36.84)
>DroSec_CAF1 2635 95 + 1
UCUUUACACUCGGAGGCCC----CCCUGUGGAAGUGUACACACCUUGCGUUUCGCAUUUCCAUUACAUU--GGGC---UGUCCAAUGACGAUCGUUACCUCCAU-----
...........((((((((----....((((((((((((.(.....).))...))))))))))......--))))---((((....))))........))))..----- ( -27.40)
>DroSim_CAF1 2641 95 + 1
UCUUUACACUCGGAGGCCC----CCCUGUGGAAGGGUACACACCUUGCGGUUGGCAUUUCCAUUACAUG--GGGC---UGGCCAAUGACGAUCGUUACCUCCAU-----
...........((((((((----(((.(((((((.((.((.(((....))))))).))))))).....)--))).---.))))..((((....))))..)))..----- ( -30.70)
>DroEre_CAF1 2739 102 + 1
UCUCUACACUCGGAGGCCC-----CCUGUAGAGGUAUACACACCUUGCGGUUGCCCCUUCCAUUACACU--GGGCUGCUGUCCAAUAACGAUCGUUACCACCAUGCCAU
..((((((...((....))-----..))))))(((((.........(((((.((((.............--)))).)))))....((((....)))).....))))).. ( -24.72)
>DroYak_CAF1 2626 95 + 1
UCUUUACACUCGGUGGCCC----CCCCGUAGACGUAUACACACCUUGCGGUUGGCAUUCCCAUUACAUU--GGGC---UGUCCCAUAACGAUCGUUACCUCCAU-----
...........((((((..----..((((((..((......)).))))))..((((..((((......)--))).---))))...........)))))).....----- ( -20.60)
>consensus
UCUUUACACUCGGAGGCCC____CCCUGUGGAAGUGUACACACCUUGCGGUUGGCAUUUCCAUUACAUU__GGGC___UGUCCAAUGACGAUCGUUACCUCCAU_____
...........((((((((((......((((((((((....(((....)))..))))))))))......))))))..........((((....)))).))))....... (-18.96 = -21.44 +   2.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:33 2006