Locus 5751

Sequence ID X_DroMel_CAF1
Location 14,902,111 – 14,902,222
Length 111
Max. P 0.645119
window9334

overview

Window 4

Location 14,902,111 – 14,902,222
Length 111
Sequences 5
Columns 111
Reading direction forward
Mean pairwise identity 90.63
Mean single sequence MFE -34.44
Consensus MFE -23.99
Energy contribution -24.87
Covariance contribution 0.88
Combinations/Pair 1.19
Mean z-score -2.36
Structure conservation index 0.70
SVM decision value 0.23
SVM RNA-class probability 0.645119
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14902111 111 + 22224390
CCUACUCAAUGAGGGUUUCAAGAUCCAGGAGAAGGGCAUGAUCAGUUGGAUCCAUCAGCAGAUGGAGAGGGAGAAGGAGCUGCGGGAGACCCCAAGGGAUCUUGAGAAGGU
(((.(((...)))..(((((((((((.((......(((...((..((...((((((....))))))......))..))..)))((....))))...)))))))))))))). ( -36.90)
>DroSec_CAF1 954 109 + 1
-CUACUUAAGGAGGGA-UCAGGGUCCAGGAGAAGGGCAUGAUCAGUUGGAUCCAUCAGCAGAUGGAGAGGGAGAAGGAGCUGCGGGAGAGCCCAAGGGAUCUUGAAAAGGA
-...............-(((((((((.........(((...((..((...((((((....))))))......))..))..)))(((....)))...)))))))))...... ( -30.40)
>DroSim_CAF1 959 111 + 1
CCUACUCAAGGAGGGUUUCAGGGUCCAGGAGAAGGGCAUGAUCAGUUGGAUCCAUCAGCAGAUGGAGAGGGAGAAGGAGCUGCGGGAGAGCCCAAGGGAUAUUGAGAAGGA
(((.(((((........(((..((((.......)))).)))((..((((.((((((....))))))............(((.(....))))))))..))..))))).))). ( -32.00)
>DroEre_CAF1 1039 111 + 1
CCUUCUCAAGGAGGGGUUCAGGGUCGAGGAGAAGGGCAUGAUCAGUUGGAUCCAUCAGCAGAUGGAGAGGGAGAAGGCGCUGCGAGGAAGUCCAAGGAGUCUUGAGAAGGA
(((((((((((.(((.(((....(((......((.((....((.......((((((....))))))....))....)).)).))).))).)))......))))))))))). ( -37.20)
>DroYak_CAF1 980 111 + 1
CUUUCUCAAGGAGGGUUUCAGGGUCCAGGAGAAGGGCAUGAUCAGUUGGAUCCACGAGCAGAUGAAGAGGGAGAAGGAGCUGCGUGAGAGCCCAAGGGAUCUUGAGAAGGA
(((((((((((...((((..((((((((..((.........))..))))))))..))))................((.(((.(....))))))......))))))))))). ( -35.70)
>consensus
CCUACUCAAGGAGGGUUUCAGGGUCCAGGAGAAGGGCAUGAUCAGUUGGAUCCAUCAGCAGAUGGAGAGGGAGAAGGAGCUGCGGGAGAGCCCAAGGGAUCUUGAGAAGGA
(((.(((((((.(((((((.((((((((..((.........))..))))))))....((((..................))))..)))).)))......))))))).))). (-23.99 = -24.87 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:32 2006