Locus 5748

Sequence ID X_DroMel_CAF1
Location 14,894,524 – 14,894,622
Length 98
Max. P 0.985384
window9324

overview

Window 4

Location 14,894,524 – 14,894,622
Length 98
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 73.96
Mean single sequence MFE -40.89
Consensus MFE -18.45
Energy contribution -21.18
Covariance contribution 2.73
Combinations/Pair 1.31
Mean z-score -2.54
Structure conservation index 0.45
SVM decision value 2.01
SVM RNA-class probability 0.985384
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14894524 98 + 22224390
GCAUUCCCAGGUCCAACGGCGCCGUGCAUAGCCAUAUGCGCGUGGCAAGAGCAAUCGAGUAGAUUGCUUAUCAUACAGCUGUGGGCACACAUCAUGCA
((((......(((((.((((((((((((((....)))))))..)))..((((((((.....))))))))........))))))))).......)))). ( -41.02)
>DroVir_CAF1 75096 95 + 1
GCUGCACCGG---CACCGCCGCCGCCCGCAGCGUGCUGCGCAUGACAGGAGCAUUCGACCAGAUUGCUGACCAUGCAGCUGCUGGCGCAGACCAGACA
.((((.((((---((.(((.(((((.....))).)).))(((((.....((((.((.....)).))))...))))).).)))))).))))........ ( -39.00)
>DroGri_CAF1 49022 95 + 1
GCGCCACCAC---CGCCGCCGCCACCCAUUGCGAGCGGCGCAUGGCAGGCACAAUCGACCAGGUUGCUGACCAUGCAACUGCCGGCGCAAACGAGGCA
(((((.....---.((((((((........))).)))))(((((((((...(((((.....)))))))).)))))).......))))).......... ( -43.70)
>DroSec_CAF1 40520 98 + 1
GCAUUCCCAGGCCCAACAGCGCCGUGCAUAGCCAUGUGCGCGUGGCAAGAGCAAUCGAGUAGGUUGCUUAUCAUGCAACUGUGGGCACACAUCAUGCA
((((......(((((.(((.....(((((.((((((....))))))..((((((((.....))))))))...))))).)))))))).......)))). ( -41.02)
>DroEre_CAF1 39395 98 + 1
GCGUUCCCGGGUCCAAGGGCUCCAUGCAUGGCCAUGUGGGCGUGGCAGGAGCAAUCGUACAUGUUGCCUAUCAUGCAGCUGUGGGCACACAUCAUGCA
((((.....((((((..((((.((((...(((.(((((..((..((....))...))..))))).)))...)))).)))).))))).).....)))). ( -36.20)
>DroYak_CAF1 39675 98 + 1
GCAUUGCCAGGCCCAACGGCUCCGUGCAUGGCCAAGUGGGCGUGGCAGGAGCAAUCGAGAAGGUUGCUUAUCAUGCAGCUGUGGGCACACAUCAUGCA
...((((((.(((((..((((........))))...))))).))))))((((((((.....))))))))....((((..((((....))))...)))) ( -44.40)
>consensus
GCAUUCCCAGG_CCAACGGCGCCGUGCAUAGCCAUGUGCGCGUGGCAGGAGCAAUCGAGCAGGUUGCUUAUCAUGCAGCUGUGGGCACACAUCAUGCA
((((......(((((.((((((...............))((((((...((((((((.....)))))))).)))))).))))))))).......)))). (-18.45 = -21.18 +   2.73)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:23 2006