| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 14,887,050 – 14,887,145 |
| Length | 95 |
| Max. P | 0.520983 |
| Location | 14,887,050 – 14,887,145 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 68.64 |
| Mean single sequence MFE | -32.85 |
| Consensus MFE | -10.53 |
| Energy contribution | -11.28 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.32 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.520983 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14887050 95 + 22224390 GGAGGCGGCCAGAUUAAAGACCUCGAGCAGCUGCACUGCAGCUGCUUGACUGCCCACUCCUGCCACUCCACCAGAUCCAUCUGC-CACACUU--ACUC-------------------- ((((..(((.((..........((((((((((((...))))))))))))..........))))).))))..((((....)))).-.......--....-------------------- ( -34.15) >DroPse_CAF1 42109 118 + 1 CGAGGCGGCCAGAUUGAACACCUCCAACAGCUGGAGAGCGGCCACGGGGCAGCCACCACCUGCUGAGCCUCCCACUGCGCCUGCACCCAAUUGCACUCCUCUCGCUCCAAGUUCGCCC ...(((((((((.(((........)))...)))).(((((((((..(((..((((.(....).)).))..)))..)).)))((((......))))........)))).....))))). ( -35.10) >DroSec_CAF1 33053 95 + 1 GGAGGCGGCCAGAUUAAAGACCUCGAGCAGCUGCACUGCAGCUGCCUGACUGCUCACUCCUGCCACUCCAGCAGAUCCAUCUGC-CACACUU--ACUC-------------------- ((((..(((.((.....((...(((.((((((((...)))))))).)))...)).....))))).)))).(((((....)))))-.......--....-------------------- ( -34.60) >DroEre_CAF1 32115 95 + 1 GGAGGCGGCCAGAUUGAAAACCUCCAGCAGCUGCACUGCGGCUGCUUGACUACCCACACCUGCCACUCCGCCAGAUCCAUCUGC-CACACUG--ACUC-------------------- ((((..(((.((..........((.(((((((((...))))))))).))..........))))).))))(.((((....)))).-)......--....-------------------- ( -30.55) >DroYak_CAF1 32611 95 + 1 GGAGGCGGCCAGAUUGAAUACCUCCAGCAGCUGCACUGCGGCCGCUUGACUGCCCACUCCUGCCACUCCGCCAGAUCCAUCGGC-GACACUA--GCAC-------------------- ((((((((((....((........))((((.....)))))))))).((......))))))(((.....((((.((....)))))-)......--))).-------------------- ( -29.80) >DroAna_CAF1 45201 86 + 1 GGAGGCGGAGCGAUUGAAGACCUCCAGCAGCUGGACGGCUGCCACAUGGCUGGACACAUUCCCAACACCGCCGCCGCCUUCU------------CCUC-------------------- ((((((((.(((.....((.(((((((...))))).))))(((....)))(((........)))....)))..)))))))).------------....-------------------- ( -32.90) >consensus GGAGGCGGCCAGAUUGAAGACCUCCAGCAGCUGCACUGCGGCCGCUUGACUGCCCACACCUGCCACUCCGCCAGAUCCAUCUGC_CACACUU__ACUC____________________ ((((..((.(((..........((..((.((((.....)))).))..))..........))))).))))................................................. (-10.53 = -11.28 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:22 2006