Locus 5746

Sequence ID X_DroMel_CAF1
Location 14,885,318 – 14,885,408
Length 90
Max. P 0.848977
window9322

overview

Window 2

Location 14,885,318 – 14,885,408
Length 90
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 77.85
Mean single sequence MFE -24.68
Consensus MFE -17.41
Energy contribution -19.22
Covariance contribution 1.81
Combinations/Pair 1.17
Mean z-score -1.48
Structure conservation index 0.71
SVM decision value 0.78
SVM RNA-class probability 0.848977
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14885318 90 + 22224390
AAGUGGCCCAUGUAUAUAGUCGCAUGUAGGCUGGGAUCUUGCCCAAAAAUAUCCAGGUGGAUUAGCCAUAUCCCACCA----AAUACGU----AUGU------A
..(((((((((((........)))))..)))((((......))))..........(((((..((....))..))))).----..)))..----....------. ( -22.20)
>DroSec_CAF1 31383 86 + 1
AAGUGGCCCAUGUAUAUAGUCGCAUGUAGGCUGGGAUCUUGCCCAGAAAUAUCCAGGUGGGUUAGCCAUAUCCCACCA----AAAACGU--------------A
..(((((...........)))))((((...(((((......))))).........((((((.((....)).)))))).----...))))--------------. ( -25.50)
>DroSim_CAF1 22749 86 + 1
AAGUGGCCCAUGUAUAUAGUCGCAUGUAGGCUGGGAUCUUGCCCAGAAAUAUCCAGGUGGGUUAGCCAUAUCCCACCA----AAUACGU--------------A
..(((((...........)))))(((((..(((((......))))).........((((((.((....)).)))))).----..)))))--------------. ( -26.90)
>DroEre_CAF1 30416 85 + 1
AAGUGGCCCAUGUAAAUAGUCGCAUGUAGGCUGGGAUCUUGCCCAGAAAUAUCCAGGUGGG-UAGCCAUAUCCCACCA----AAUACGU--------------A
..(((((...........)))))(((((..(((((......))))).........((((((-((....)).)))))).----..)))))--------------. ( -26.30)
>DroYak_CAF1 30925 86 + 1
AAGUGGCCCAUGUAAAUAGUCGCAUGUAGGCUGGGAUCUUGCCCAGAAAUAUCCAGGUGGGUUAGCCAUAUCCCACCA----AGUACGU--------------A
..(((((...........)))))(((((..(((((......))))).........((((((.((....)).)))))).----..)))))--------------. ( -26.80)
>DroPer_CAF1 58342 92 + 1
AAGUCGCCC-UGUAAAUAGCUAC-UGUAGAUCGGGGG------AAGGGAU---GGGACGGG-AUGCAGCAUCCAACCACACAAAUACAUACAUAUGUACGAGCA
...((((((-((...((((...)-)))....))))).------...(..(---((....((-(((...)))))..)))..)...(((((....))))))))... ( -20.40)
>consensus
AAGUGGCCCAUGUAAAUAGUCGCAUGUAGGCUGGGAUCUUGCCCAGAAAUAUCCAGGUGGGUUAGCCAUAUCCCACCA____AAUACGU______________A
..(((((...........)))))(((((..(((((......))))).........((((((.((....)).)))))).......)))))............... (-17.41 = -19.22 +   1.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:21 2006