Locus 5743

Sequence ID X_DroMel_CAF1
Location 14,865,759 – 14,865,868
Length 109
Max. P 0.535322
window9316

overview

Window 6

Location 14,865,759 – 14,865,868
Length 109
Sequences 6
Columns 115
Reading direction forward
Mean pairwise identity 72.61
Mean single sequence MFE -37.42
Consensus MFE -16.89
Energy contribution -17.78
Covariance contribution 0.89
Combinations/Pair 1.30
Mean z-score -1.71
Structure conservation index 0.45
SVM decision value 0.00
SVM RNA-class probability 0.535322
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14865759 109 + 22224390
AACA------AGUCCUGGCUAUCGGAGCUAACCGAUCAUGAUCUGGAAUCGGAAAUCAUGUGUCAGGUGGCAAAGCGUGAUGCCAACUGCUUUAAUGCCACCAAUACGGAUGUCC
....------.((((((((.(((((......)))))(((((((((....))))..))))).))))(((((((((((((.......)).))))...))))))).....)))).... ( -35.20)
>DroVir_CAF1 49442 115 + 1
GACGAUGGCAAACGCUGGCUGCCCACGCUGACCGAUCAUGAUCUCAGCUCGGAGCUCUAUUGCCAGCUGGGCAAGCGUUUGGACAGAUGCUUCAAUGCCAGCCAGGUGCAUUUGC
..(((..(((...((((((.(((((.((((.((((...((....))..)))).((......)))))))))))((((((((....))))))))....))))))....)))..))). ( -45.70)
>DroPse_CAF1 29811 109 + 1
GACA------ACGAAUGGAUGCACCGGCUCACCGAUCACGAUCUCGACUCGGAGAUAAUUUGUCCCCUGGUCGCCAGCGAUCGGGGAUGCUUCAAUGCCAGCAGCGUCAACAGGC
....------.......(((((.(.(((((.((((...((....))..)))).))......((((((.(((((....)))))))))))........))).)..)))))....... ( -34.50)
>DroSec_CAF1 19565 109 + 1
AACA------AAUCCUGGCUAUCGGAGCUAACCGAUCACGAUCUGGAAUCGGAAAUCCUCUGCCAGCUGGCAGAGCGUGAUGGCAACUGCUUCAAUGCCACCAAUACGGAUGUCC
....------.((((((((.((.(((((...((.((((((.((((....))))....(((((((....))))))))))))))).....))))).)))))).......)))).... ( -37.91)
>DroEre_CAF1 19742 109 + 1
AACA------AGUCCUGGCUAUCGCAGCUAACCGAUCACGAUCUGGAAUCGGAAAUCAUGUGCCAGGUGGCGGAGCGUGAUCAUGACUGCUUCAAUGCCACCAAUACGGAUAUCC
....------.((((((((....(((.....(((((..(.....)..)))))......)))))))(((((((((((((.......)).)))))...)))))).....)))).... ( -33.40)
>DroYak_CAF1 19914 109 + 1
AACA------AGUCCUGGCUAUCGGAGCUAACCGAUCACGAUCUGGAAUCGGAGAUCAUGUGCCAGGUGGCAGAGCGUGAUGGUGACUGCUUCAAUGCCACCAAUACGAAUGUCC
....------...((((((.(((((......)))))...(((((........)))))....)))))).((((...((((.(((((...((......))))))).))))..)))). ( -37.80)
>consensus
AACA______AGUCCUGGCUAUCGGAGCUAACCGAUCACGAUCUGGAAUCGGAAAUCAUGUGCCAGCUGGCAGAGCGUGAUGGCAACUGCUUCAAUGCCACCAAUACGGAUGUCC
...............(((((.....))))).((((((........)).)))).............((((((((((((..........)))))...)))))))............. (-16.89 = -17.78 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:16 2006