| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 14,854,476 – 14,854,569 |
| Length | 93 |
| Max. P | 0.735825 |
| Location | 14,854,476 – 14,854,569 |
|---|---|
| Length | 93 |
| Sequences | 3 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 80.78 |
| Mean single sequence MFE | -10.57 |
| Consensus MFE | -10.15 |
| Energy contribution | -9.27 |
| Covariance contribution | -0.88 |
| Combinations/Pair | 1.21 |
| Mean z-score | 0.40 |
| Structure conservation index | 0.96 |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.735825 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14854476 93 - 22224390 UCACGAGUAAAGUCACGUGUUGACCGCGUUUGAACAUUUGUUAAGCUCUAUUUAAAAUUAUAAUCAUUCUAUGCUCUUUAC-AUUCUACAAAUA ....(((((..((((.....))))...((((((.(....))))))).........................))))).....-............ ( -10.20) >DroSec_CAF1 8521 93 - 1 UCACGAGUAAAGUCACCUGUUGACCGCGUUCGAACAUUUGUUAAGCUCUAUUUAAAAUUAUAAUCAUUCUAUGCUCUUUAC-AUUCUACAAACA ....(((((..((((.....)))).((.....(((....)))..)).........................))))).....-............ ( -9.80) >DroYak_CAF1 8551 84 - 1 UCACGAGCUAAGUCACCUGUUGACCGCAUUCGAACAUUUGUUAAGCUCCAUUUGGAUUUCAUAUCAUUCUAGGUUCUGUACA----------CA ....(((((.((.((..((((((......)).))))..)))).))))).(((((((...........)))))))........----------.. ( -11.70) >consensus UCACGAGUAAAGUCACCUGUUGACCGCGUUCGAACAUUUGUUAAGCUCUAUUUAAAAUUAUAAUCAUUCUAUGCUCUUUAC_AUUCUACAAACA ....(((((..((((.....)))).((.....(((....)))..)).........................))))).................. (-10.15 = -9.27 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:14 2006