| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 14,850,469 – 14,850,574 |
| Length | 105 |
| Max. P | 0.953435 |
| Location | 14,850,469 – 14,850,574 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 75.37 |
| Mean single sequence MFE | -35.77 |
| Consensus MFE | -18.12 |
| Energy contribution | -16.85 |
| Covariance contribution | -1.27 |
| Combinations/Pair | 1.58 |
| Mean z-score | -2.26 |
| Structure conservation index | 0.51 |
| SVM decision value | 1.43 |
| SVM RNA-class probability | 0.953435 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14850469 105 - 22224390 CCUAAACAUCCGGCCGAGCACAUUGGAAACCCUCACCAAGAGUGGCAACUGCUCGCUGCACAAUCGCAGCAAGUAUCGAAAGAAU-CUUCUGAGCGGUGGUGGUGG--- ......((((..(((...(((.((((.........))))..)))...((((((((((((......)))))(((..((....))..-)))..)))))))))))))).--- ( -34.50) >DroPse_CAF1 13974 107 - 1 CCUGAACAUACGACCCUCCACACUGGAGACGCUCACCAAAAGCGGCAACAGUUCGCUGCACAAUCGCAGCAAGCAUCGGAAGAAU-ACACCCUCCGGGGGAG-AGGAUC .............((((((...((((((.((((.......))))......(((.(((((......))))).))).((....))..-.....)))))).))))-.))... ( -37.00) >DroWil_CAF1 5447 106 - 1 UCUCAAUAUACGUCCAUCCACGCUGGAGACGUUGACAAAGAGUGGCAACAGUUCGCUGCAUAAUCGCAGCAAGCAUCGCAAGAAU-CCGCUGACCAGCAACGGCGA--C .(((.....(((((..(((.....)))))))).......)))((....))(((.(((((......))))).))).((....))..-.(((((........))))).--. ( -31.00) >DroYak_CAF1 5129 108 - 1 UCUAAACAUCCGGCCGAGCACGUUGGAAACCCUCACCAAGAGUGGCAACUGCUCGCUGCACAAUCGCAGCAAGUAUCGGAAGAAU-CUCCUUAGCGGAGGUGGCGGUGC ......((.(((.(((((((.((((....(((((.....))).)))))))))))(((((......))))).....((....))((-((((.....))))))))))))). ( -40.10) >DroMoj_CAF1 7062 104 - 1 UCUGAACAUACGCCCCUCGACGCUGGAGACGCUCGCCAAGAGCGGCAACUGCUCGCUCCACAAUCGGAGCAAGCAUCGCAAGAA-UAUUUUAG---CUGGAG-AAGAUC ...............(((.(.(((((((.(((((.....))))).....((((.(((((......))))).))))((....)).-..))))))---)).)))-...... ( -35.00) >DroPer_CAF1 29441 107 - 1 CCUAAACAUACGACCCUCCACACUGGAGACGCUCACCAAAAGCGGCAACAGUUCGCUGCACAAUCGCAGCAAGCAUCGGAAGAAU-ACACCCUCCGGGGGAG-AGGAUC .............((((((...((((((.((((.......))))......(((.(((((......))))).))).((....))..-.....)))))).))))-.))... ( -37.00) >consensus CCUAAACAUACGACCCUCCACACUGGAGACGCUCACCAAGAGCGGCAACAGCUCGCUGCACAAUCGCAGCAAGCAUCGGAAGAAU_ACACUCACCGGGGGAG_AGGAUC ........................(....)(((......(((((....).))))(((((......))))).))).((....))......(((.....)))......... (-18.12 = -16.85 + -1.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:13 2006