Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,633,155 – 1,633,395 |
Length | 240 |
Max. P | 0.838637 |
Location | 1,633,155 – 1,633,275 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.64 |
Mean single sequence MFE | -36.85 |
Consensus MFE | -34.21 |
Energy contribution | -34.02 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.03 |
Mean z-score | -2.07 |
Structure conservation index | 0.93 |
SVM decision value | 0.74 |
SVM RNA-class probability | 0.838637 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1633155 120 - 22224390 CCUACAGCAUGAACGAAUUUACAUUAAAAUUUGGAUGUCGGUGGAGCGGUUAUUGCUGCAGCAGCUGCAGCACAAACUCAGAGAUGCAUGAGUUGCAUUGGCGUAUCAAAAUCUGCAGUA ..(((.(((.((.(((((((......))))))).(((((((((.(((.(((..((((((((...))))))))..)))(((........)))))).))))))))).......))))).))) ( -35.00) >DroSim_CAF1 44852 120 - 1 CCCACAGCAUGAACGAAAUUACAUUAAAAUUUGGAUGCCGGUGGAGCGGUUAUUGCUGCAGCAGCUGCAGCACAAACUCAGAGAUGCAUGAGUUGCAUUGGCGUAUCAAAAUCUGCACUA ......(((.((.(.(((((.......))))).)(((((((((.(((.(((..((((((((...))))))))..)))(((........)))))).))))))))).......))))).... ( -35.20) >DroEre_CAF1 29442 120 - 1 CCCACUGCAUGAACGAAAUUACAUUAAAAUUUGGAUGCCGGUGGAGCGGUUAUUGCUGCAGCAGCUGCAGCACAAACUCAGAGAUGCAUGAGUUGCAUUGGCGUAUCAAAAUCUGCAGUA ...((((((.((.(.(((((.......))))).)(((((((((.(((.(((..((((((((...))))))))..)))(((........)))))).))))))))).......)))))))). ( -40.20) >DroYak_CAF1 32747 120 - 1 CCCACGGCAUGAACGAAAUUACAUUAAAAUUUGGAUGCCGGUGGAGCGGUUAUUGCUGCAGCAGCUGCAGCACAAACUCAGAGAUGCAUGAGUUGCAUUGGCGUAUCAAAAUCUGCAGUA .(((((((((...(.(((((.......))))).)))))).)))).(((((....)))))....(((((((....((((((........))))))((....))..........))))))). ( -37.00) >consensus CCCACAGCAUGAACGAAAUUACAUUAAAAUUUGGAUGCCGGUGGAGCGGUUAUUGCUGCAGCAGCUGCAGCACAAACUCAGAGAUGCAUGAGUUGCAUUGGCGUAUCAAAAUCUGCAGUA ......(((.((..(......).......((((((((((((((.(((.(((..((((((((...))))))))..)))(((........)))))).))))))))).))))).))))).... (-34.21 = -34.02 + -0.19)
Location | 1,633,195 – 1,633,315 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.08 |
Mean single sequence MFE | -32.27 |
Consensus MFE | -29.08 |
Energy contribution | -30.45 |
Covariance contribution | 1.37 |
Combinations/Pair | 1.02 |
Mean z-score | -1.68 |
Structure conservation index | 0.90 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.568529 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1633195 120 + 22224390 UGAGUUUGUGCUGCAGCUGCUGCAGCAAUAACCGCUCCACCGACAUCCAAAUUUUAAUGUAAAUUCGUUCAUGCUGUAGGGUUGGUAAUGUCUUUCUGACAUUUUGACUUCAUUAAUUCG .(((((.((((((((((((.((.(((.......))).)).))((((..........))))............)))))))(((..(.((((((.....)))))))..))).))).))))). ( -28.30) >DroSim_CAF1 44892 120 + 1 UGAGUUUGUGCUGCAGCUGCUGCAGCAAUAACCGCUCCACCGGCAUCCAAAUUUUAAUGUAAUUUCGUUCAUGCUGUGGGGUUGGUAAUGUCUUUCUGACAUUUUGACUUCAUUAAUUCG .(((((..((((((((...))))))))...((((((((((.((((((.(((((.......))))).)...))))))))))).))))((((((.....))))))...........))))). ( -36.30) >DroEre_CAF1 29482 120 + 1 UGAGUUUGUGCUGCAGCUGCUGCAGCAAUAACCGCUCCACCGGCAUCCAAAUUUUAAUGUAAUUUCGUUCAUGCAGUGGGGUUGGUAAUGCCUUUCUGACAUUUUGACUUCAUUAAUUCA .(((((((((((((((...))))))))......(((.....)))...)))))))(((((.....(((...((((((..((((.......))))..))).)))..)))...)))))..... ( -30.50) >DroYak_CAF1 32787 120 + 1 UGAGUUUGUGCUGCAGCUGCUGCAGCAAUAACCGCUCCACCGGCAUCCAAAUUUUAAUGUAAUUUCGUUCAUGCCGUGGGGUUGGUAAUGCCUUUCUGACAUUUUGACUUCAUUAAUUCG .(((((..((((((((...))))))))...((((((((((.((((((.(((((.......))))).)...))))))))))).))))............................))))). ( -34.00) >consensus UGAGUUUGUGCUGCAGCUGCUGCAGCAAUAACCGCUCCACCGGCAUCCAAAUUUUAAUGUAAUUUCGUUCAUGCUGUGGGGUUGGUAAUGCCUUUCUGACAUUUUGACUUCAUUAAUUCG .(((((..((((((((...))))))))...((((((((((.((((((.(((((.......))))).)...))))))))))).))))((((((.....))))))...........))))). (-29.08 = -30.45 + 1.37)
Location | 1,633,195 – 1,633,315 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.08 |
Mean single sequence MFE | -29.70 |
Consensus MFE | -26.92 |
Energy contribution | -26.30 |
Covariance contribution | -0.62 |
Combinations/Pair | 1.09 |
Mean z-score | -1.62 |
Structure conservation index | 0.91 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.535731 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1633195 120 - 22224390 CGAAUUAAUGAAGUCAAAAUGUCAGAAAGACAUUACCAACCCUACAGCAUGAACGAAUUUACAUUAAAAUUUGGAUGUCGGUGGAGCGGUUAUUGCUGCAGCAGCUGCAGCACAAACUCA .................((((((.....))))))...((((((((.((((...(((((((......))))))).))))..))))...))))..((((((((...))))))))........ ( -28.50) >DroSim_CAF1 44892 120 - 1 CGAAUUAAUGAAGUCAAAAUGUCAGAAAGACAUUACCAACCCCACAGCAUGAACGAAAUUACAUUAAAAUUUGGAUGCCGGUGGAGCGGUUAUUGCUGCAGCAGCUGCAGCACAAACUCA .................((((((.....))))))...((((((((.((((...(.(((((.......))))).)))))..))))...))))..((((((((...))))))))........ ( -28.90) >DroEre_CAF1 29482 120 - 1 UGAAUUAAUGAAGUCAAAAUGUCAGAAAGGCAUUACCAACCCCACUGCAUGAACGAAAUUACAUUAAAAUUUGGAUGCCGGUGGAGCGGUUAUUGCUGCAGCAGCUGCAGCACAAACUCA .................((((((.....))))))...(((((((((((((...(.(((((.......))))).)))).))))))...))))..((((((((...))))))))........ ( -29.60) >DroYak_CAF1 32787 120 - 1 CGAAUUAAUGAAGUCAAAAUGUCAGAAAGGCAUUACCAACCCCACGGCAUGAACGAAAUUACAUUAAAAUUUGGAUGCCGGUGGAGCGGUUAUUGCUGCAGCAGCUGCAGCACAAACUCA .................((((((.....))))))...(((((((((((((...(.(((((.......))))).)))))).))))...))))..((((((((...))))))))........ ( -31.80) >consensus CGAAUUAAUGAAGUCAAAAUGUCAGAAAGACAUUACCAACCCCACAGCAUGAACGAAAUUACAUUAAAAUUUGGAUGCCGGUGGAGCGGUUAUUGCUGCAGCAGCUGCAGCACAAACUCA .................((((((.....))))))...((((((((.((((...((((.((......)).)))).))))..))))...))))..((((((((...))))))))........ (-26.92 = -26.30 + -0.62)
Location | 1,633,275 – 1,633,395 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.28 |
Mean single sequence MFE | -30.90 |
Consensus MFE | -26.05 |
Energy contribution | -25.93 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.12 |
Mean z-score | -2.03 |
Structure conservation index | 0.84 |
SVM decision value | 0.51 |
SVM RNA-class probability | 0.762730 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1633275 120 - 22224390 AGAAAGCACGGUGCAUGUCGAAAAUUGAGAUGCUUUGGCGCUGAUAAAACUUUCGCAGACGCCCAGAAGGCAGAUUUCGUCGAAUUAAUGAAGUCAAAAUGUCAGAAAGACAUUACCAAC .........((((.(((((.....((((.((((((((((((((............))).))))...))))).((((((((.......))))))))...)).))))...)))))))))... ( -32.60) >DroSim_CAF1 44972 120 - 1 AGAAAGCACGGUGCAUGUCGAAAAUUGAGAUGCUUUGGCGCUGAUAAAACUUUCGCAGACGGCCAGAAGGCAGAUUUCGUCGAAUUAAUGAAGUCAAAAUGUCAGAAAGACAUUACCAAC ....(((.(((.((((.((((...)))).)))).)))..))).......(((((...(((((((....))).((((((((.......))))))))....)))).)))))........... ( -31.40) >DroEre_CAF1 29562 120 - 1 AAAAAGCACGGUGCAUGUCGAAAAUCGAGAUGCUUUGGUGCUGAUAAAACUUUCGCAGACGGCCAGAAAGCAGAUUUCGUUGAAUUAAUGAAGUCAAAAUGUCAGAAAGGCAUUACCAAC ....(((((.(.((((.(((.....))).))))..).))))).......(((((...((((((......)).((((((((((...))))))))))....)))).)))))........... ( -34.90) >DroYak_CAF1 32867 120 - 1 AAAAAGCACGGUGCAUGACGAAAAUUGAGAUGCUUUGGUGCUGAUAAAACUUUCGCAGACGGACAGAAAGCAGAUUUUGUCGAAUUAAUGAAGUCAAAAUGUCAGAAAGGCAUUACCAAC ....(((((.(.((((..(((...)))..))))..).))))).......(((((...(((((((((((......))))))).......((....))...)))).)))))........... ( -24.70) >consensus AAAAAGCACGGUGCAUGUCGAAAAUUGAGAUGCUUUGGCGCUGAUAAAACUUUCGCAGACGGCCAGAAAGCAGAUUUCGUCGAAUUAAUGAAGUCAAAAUGUCAGAAAGACAUUACCAAC ....(((((.(.((((.((((...)))).))))..).))))).......(((((...........)))))..((((((((.......))))))))..((((((.....))))))...... (-26.05 = -25.93 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:13 2006