| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 14,846,536 – 14,846,640 |
| Length | 104 |
| Max. P | 0.775554 |
| Location | 14,846,536 – 14,846,640 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 77.80 |
| Mean single sequence MFE | -30.40 |
| Consensus MFE | -22.49 |
| Energy contribution | -22.63 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.775554 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14846536 104 - 22224390 AACCUUAACCAGCGUUGGUUCCUCAACGGAGUCAUUUCCACCAAGCAAGCGGAGAGCAUUAUCAGUCUCAUAAGAGAUUUGGCCAGCGUAAGUGAUACAUA------UCC .......((..(((((((((.(((...((((....)))).((........)).))).......((((((....)))))).)))))))))..))........------... ( -24.20) >DroVir_CAF1 2028 110 - 1 AAUUUGAACCAGCGCUGGUUCCUCAACGGAGUCAUUUCCACCAAACAGGCGGAGAGCAUCAUUGGACUCAUACGCGAUCUGGCUAGCGUAAGUAAUUGCAUUGAUAUUUC .....((((((....)))))).((((..(((((.(((((.((.....)).))))).((....)))))))....(((((...(((......))).))))).))))...... ( -29.30) >DroGri_CAF1 1707 109 - 1 AAUCUGAACCAGCGCUGGUUCCUCAACGGGCUUAUCUCCACCAAACAGGCAGAGAGCAUCAUUGGUCUCAUACGGGAUCUGGCAAGCGUAAGUCGUUGAAUA-CGAUCAC .(((.((((((....)))))).(((((((.((((((((..((.....))..))))((......((((((....))))))......)).)))))))))))...-.)))... ( -32.00) >DroSec_CAF1 1173 104 - 1 AACCUCAACCAGCGGUGGUUCCUUAAUGGAGUCAUUUCCACCAAGCAGGCGGAGAGCAUUAUCAGUCUCAUAAGAGAUUUGGCCAGCGUAAGUGAAACCUG------CAA ...(((..((.(((((((((((.....))))......)))))..)).))..))).(((.....((((((....)))))).((...((....))....))))------).. ( -29.10) >DroYak_CAF1 1193 106 - 1 AACCUCAACCAGCGCUGGUUCCUCAACGGAGUCAUUUCCACCAAGCAGGCGGAGAGCAUUAUCAGUCUCAUCAGAGAUUUGGCCAGCGUAAGUGAAGGCUUAGAGU---- ..(((..((..(((((((((((.....)))....(((((.((.....)).)))))........((((((....))))))..))))))))..))..)))........---- ( -33.10) >DroAna_CAF1 1169 101 - 1 AAUCUCAAUCAGCGCUGGUUCCUCAACGGUCUGAUCUCCACCAAGCAGGCGGAGAGCAUCAUCGGACUAAUCCGGGAUCUGGCCAGCGUAAGUGC---CAU------AAA ...........((((((((((((....((((((((((((.((.....)).)))))......))))))).....))))....))))))))......---...------... ( -34.70) >consensus AACCUCAACCAGCGCUGGUUCCUCAACGGAGUCAUUUCCACCAAGCAGGCGGAGAGCAUCAUCAGUCUCAUAAGAGAUCUGGCCAGCGUAAGUGAUAGCAU______CAC .......((..(((((((((((.....)))....(((((.((.....)).)))))........((((((....))))))..))))))))..))................. (-22.49 = -22.63 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:12 2006