Locus 5738

Sequence ID X_DroMel_CAF1
Location 14,839,931 – 14,840,029
Length 98
Max. P 0.903428
window9310

overview

Window 0

Location 14,839,931 – 14,840,029
Length 98
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 85.16
Mean single sequence MFE -21.50
Consensus MFE -14.84
Energy contribution -16.00
Covariance contribution 1.16
Combinations/Pair 1.09
Mean z-score -2.45
Structure conservation index 0.69
SVM decision value 1.03
SVM RNA-class probability 0.903428
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14839931 98 - 22224390
UAGCAAAUUCGUAAGCAAUAUGCUUGCCUUAAUCGUAAUCGUUAUCAUUAUGGCUAACGCUAACGCUACCG------UAAUCAAAAUCAUGUAACGAUUAUAGA
..........((((((.....)))))).......((((((((((.(((..((((....))))(((....))------)..........)))))))))))))... ( -23.60)
>DroSec_CAF1 6103 98 - 1
UAGCAAAUUCGUAAGCAAUAUGCUUGCCUUAAUCGUAAUCGUUAUCAUUAUGGCUAACGCUACCGUAAUCA------UAAUCAUAAUCAUGUAACGGUUAUAGA
..........((((((.....)))))).......(((((((((((.((((((((....))....(....).------....))))))...)))))))))))... ( -21.90)
>DroEre_CAF1 5973 104 - 1
UAGCAAAUUCGUAAGCAAUAUGCUUGCCCUAAUCGUAAUCGUUAUCAUUAUGGCUAACGCUACCGUAAUCAUAGUCAUAAUCAUAAUCAUGUAACGGUUAUAGA
..........((((((.....))))))..(((((((.((.(((((.(((((((((((((....))).....)))))))))).))))).))...))))))).... ( -25.10)
>DroYak_CAF1 6050 98 - 1
UAGCAAAUUCGUAAGCAACAUGCUUGCCUUAAUCGUAAACGUUAUCAUUAUGGCUAUCGCUACCGUAAUCA------UAAUCAUAAUCGUGUAACGGUUAUACA
..........((((((.....))))))..(((((((..(((((((.((((((..((.((....))))..))------)))).)))).)))...))))))).... ( -23.70)
>DroAna_CAF1 5927 85 - 1
UAGCAAAUUCGUAAGCAAUAUGCUUGCCUUAAUCUUUAUCGUU-----UAUCGCUAAUGCUAUCGUAA------------UCAUAAUCAUAUAACGGUUA--GA
(((((.....((((((.....))))))........(((.((..-----...)).))))))))......------------...(((((.......)))))--.. ( -13.20)
>consensus
UAGCAAAUUCGUAAGCAAUAUGCUUGCCUUAAUCGUAAUCGUUAUCAUUAUGGCUAACGCUACCGUAAUCA______UAAUCAUAAUCAUGUAACGGUUAUAGA
..........((((((.....)))))).......((((((((((......((((....))))...................(((....)))))))))))))... (-14.84 = -16.00 +   1.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:11 2006