Locus 5736

Sequence ID	X_DroMel_CAF1
Location	14,834,458 – 14,834,549
Length	91
Max. P	0.977851

overview

Window 6

Location	14,834,458 – 14,834,549
Length	91
Sequences	6
Columns	91
Reading direction	forward
Mean pairwise identity	98.24
Mean single sequence MFE	-18.97
Consensus MFE	-19.22
Energy contribution	-18.97
Covariance contribution	-0.25
Combinations/Pair	1.04
Mean z-score	-0.71
Structure conservation index	1.01
SVM decision value	0.59
SVM RNA-class probability	0.791565
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14834458 91 + 22224390
UAAAUUGCUCGAAGUCCUCGAUUUCUAUUCGGCAUUUGCGAAUAGCUUUGCACGCAAUCUGGUGCUCACCUACAAUCUCAGACAUCGACUG
........((((.(((...((((.(((((((.(....))))))))....((((........))))........))))...))).))))... ( -19.90)
>DroGri_CAF1 1245 91 + 1
UAAAUUGCUCGAAGUCCUCGAUUUCUAUUCGGCAUUUGCGAAUAGCUUUGCACGCAAUCUGGUGCUCACCUACAAUCUCAGACAUCGACUG
........((((.(((...((((.(((((((.(....))))))))....((((........))))........))))...))).))))... ( -19.90)
>DroSec_CAF1 686 91 + 1
UAAAUUGCUCGAAGUCCUCGAUUUUUAUUCGGCAUUUGCGAAUAGCUUUGCACGCAAUCUGGUGCUCACCUACAAUCUCAGACAUCGACUG
........((((.(((...((((.(((((((.(....))))))))....((((........))))........))))...))).))))... ( -18.10)
>DroSim_CAF1 686 91 + 1
UAAAUUGCUCGAAGUCCUCGAUUUUUAUUCGGCAUUUGCGAAUAGCUUUGCACGCAAUCUGGUGCUCACCUACAAUCUCAGACAUCGACUG
........((((.(((...((((.(((((((.(....))))))))....((((........))))........))))...))).))))... ( -18.10)
>DroEre_CAF1 697 91 + 1
UAAAUUGCUCGAAGUCCUCGAUUUUUAUUCGGCAUUUGCGAAUAGCUUUGCACGCAAUCUGGUGCUCACCUACAAUCUCAGACAUCGACUG
........((((.(((...((((.(((((((.(....))))))))....((((........))))........))))...))).))))... ( -18.10)
>DroWil_CAF1 2705 91 + 1
UAAAUUGCUCGAAGUCCUCGAUUUCUAUUCGGCAUUCGCGAAUAGUUUUGCACGCAAUCUGGUGCUCACCUAUAAUCUCAGACAUCGACUG
........((((.(((...((((.(((((((.......)))))))....((((........))))........))))...))).))))... ( -19.70)
>consensus
UAAAUUGCUCGAAGUCCUCGAUUUCUAUUCGGCAUUUGCGAAUAGCUUUGCACGCAAUCUGGUGCUCACCUACAAUCUCAGACAUCGACUG
........((((.(((...((((.(((((((.(....))))))))....((((........))))........))))...))).))))... (-19.22 = -18.97 +  -0.25)

alignment

secondary structure

dotplot

Window 7

Location	14,834,458 – 14,834,549
Length	91
Sequences	6
Columns	91
Reading direction	reverse
Mean pairwise identity	98.24
Mean single sequence MFE	-24.90
Consensus MFE	-23.17
Energy contribution	-23.03
Covariance contribution	-0.14
Combinations/Pair	1.04
Mean z-score	-1.59
Structure conservation index	0.93
SVM decision value	1.80
SVM RNA-class probability	0.977851
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14834458 91 - 22224390
CAGUCGAUGUCUGAGAUUGUAGGUGAGCACCAGAUUGCGUGCAAAGCUAUUCGCAAAUGCCGAAUAGAAAUCGAGGACUUCGAGCAAUUUA
...((((.((((..(((((((.(..(........)..).)))....((((((((....).))))))).))))..)))).))))........ ( -26.50)
>DroGri_CAF1 1245 91 - 1
CAGUCGAUGUCUGAGAUUGUAGGUGAGCACCAGAUUGCGUGCAAAGCUAUUCGCAAAUGCCGAAUAGAAAUCGAGGACUUCGAGCAAUUUA
...((((.((((..(((((((.(..(........)..).)))....((((((((....).))))))).))))..)))).))))........ ( -26.50)
>DroSec_CAF1 686 91 - 1
CAGUCGAUGUCUGAGAUUGUAGGUGAGCACCAGAUUGCGUGCAAAGCUAUUCGCAAAUGCCGAAUAAAAAUCGAGGACUUCGAGCAAUUUA
...((((.((((..(((((((.(..(........)..).))).....(((((((....).))))))..))))..)))).))))........ ( -23.50)
>DroSim_CAF1 686 91 - 1
CAGUCGAUGUCUGAGAUUGUAGGUGAGCACCAGAUUGCGUGCAAAGCUAUUCGCAAAUGCCGAAUAAAAAUCGAGGACUUCGAGCAAUUUA
...((((.((((..(((((((.(..(........)..).))).....(((((((....).))))))..))))..)))).))))........ ( -23.50)
>DroEre_CAF1 697 91 - 1
CAGUCGAUGUCUGAGAUUGUAGGUGAGCACCAGAUUGCGUGCAAAGCUAUUCGCAAAUGCCGAAUAAAAAUCGAGGACUUCGAGCAAUUUA
...((((.((((..(((((((.(..(........)..).))).....(((((((....).))))))..))))..)))).))))........ ( -23.50)
>DroWil_CAF1 2705 91 - 1
CAGUCGAUGUCUGAGAUUAUAGGUGAGCACCAGAUUGCGUGCAAAACUAUUCGCGAAUGCCGAAUAGAAAUCGAGGACUUCGAGCAAUUUA
...((((.((((..((((........(((((.....).))))....(((((((.(....)))))))).))))..)))).))))........ ( -25.90)
>consensus
CAGUCGAUGUCUGAGAUUGUAGGUGAGCACCAGAUUGCGUGCAAAGCUAUUCGCAAAUGCCGAAUAAAAAUCGAGGACUUCGAGCAAUUUA
...((((.((((..((((...(((..(((((.....).))))...)))((((((....).)))))...))))..)))).))))........ (-23.17 = -23.03 +  -0.14)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:08 2006