Locus 5734

Sequence ID X_DroMel_CAF1
Location 14,820,747 – 14,820,846
Length 99
Max. P 0.522174
window9304

overview

Window 4

Location 14,820,747 – 14,820,846
Length 99
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 81.50
Mean single sequence MFE -21.33
Consensus MFE -14.12
Energy contribution -15.02
Covariance contribution 0.89
Combinations/Pair 1.18
Mean z-score -1.42
Structure conservation index 0.66
SVM decision value -0.02
SVM RNA-class probability 0.522174
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14820747 99 - 22224390
----------AUUUACCCAUUUUCCACCUGCAGUCACUGUGCAGCUUACAGUUUGAGCAGCACUGCCCACAAGCUAAUAUUUGUCUAAGAAAUGAGCAUGCAACUUUAA
----------..................((((......((((.(((((.....))))).)))).........(((.((.(((.....))).)).))).))))....... ( -17.00)
>DroPse_CAF1 12240 93 - 1
CCUUCUGGCCGUUUCCCCACUUUC----UGUAG-GAUUAUGCAGCUUACAGUUUGAGCAGCACUGCUAGAAAGCUAAUAUUUGUAC-----------AUGAAGGCUUAU
(((((((..((........(((((----(((((-.....(((.(((((.....))))).))))))).))))))........))..)-----------).)))))..... ( -23.29)
>DroSec_CAF1 521 99 - 1
----------AUUUAACCAUUUUCCACCGGCAGCCACUGUGCAGCUUACAGUUUGAGCAGCACUGCUCAAAAGCUAAUAUUUGCCUAAGAAAUGAGCAUGCAACUUUAA
----------.......((((((.....(((((..((((((.....))))))(((((((....)))))))..........)))))...))))))............... ( -21.90)
>DroSim_CAF1 522 99 - 1
----------AUUUAACCAUUUUCCACCUGCAGCCACUGUGCAGCUUACAGUUUGAGCAGCACUGCUCAAAAGCUAAUAUUUGCCUAAGAAAUGAGCAUGCAACUUUAA
----------...................((((...))))((((((((...((((((((....)))))))).((........))........))))).)))........ ( -21.20)
>DroEre_CAF1 527 99 - 1
----------ACUCACCCAUUUUCCACCUGCAGCAACUGUGCAGCUUACAGUUUGAGCAGCACGGCUCAAAAGCUAAUAUUUGCCUAAGAAAUGAGCAUGCAACUGUAA
----------..................(((((......(((((((((...(((((((......))))))).((........))........))))).)))).))))). ( -22.30)
>DroYak_CAF1 547 99 - 1
----------AUUCACAGAUUUUCCACCUGCAGCAACUGUGCAGCUUACAGUUUGAGCAGCACUGCUCAAAAGCUAAUAUUUGCCUAAGAAAUGAGCAUGCAACUUUAA
----------..................(((((((....))).(((((...((((((((....)))))))).((........))........))))).))))....... ( -22.30)
>consensus
__________AUUUACCCAUUUUCCACCUGCAGCCACUGUGCAGCUUACAGUUUGAGCAGCACUGCUCAAAAGCUAAUAUUUGCCUAAGAAAUGAGCAUGCAACUUUAA
.............................((((...))))((((((((...((((((((....)))))))).((........))........))))).)))........ (-14.12 = -15.02 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:05 2006