Locus 5732

Sequence ID X_DroMel_CAF1
Location 14,819,697 – 14,819,789
Length 92
Max. P 0.662117
window9301

overview

Window 1

Location 14,819,697 – 14,819,789
Length 92
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 75.25
Mean single sequence MFE -17.03
Consensus MFE -6.32
Energy contribution -5.84
Covariance contribution -0.48
Combinations/Pair 1.21
Mean z-score -1.84
Structure conservation index 0.37
SVM decision value 0.27
SVM RNA-class probability 0.662117
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14819697 92 + 22224390
U-------CUAUGACUUCAAAGUGUACCUUAUAUUUAGGUACAGCUUAUUUUGUAGUACCUCUACCAUAUCUGACAACUGACUACACCAAUUUACCCAA
.-------...........((((((((((.......))))))).)))....((((((........((....)).......))))))............. ( -13.86)
>DroSec_CAF1 13655 99 + 1
UCUAUUACUUAUGAGUUGAAAUUGUACCUCCUAUUUGGGUACAGUUUAUUUCAGAGUACCUCUACCAUUUCUGACAACUGACUACACCAAUUUACCAAA
...........(.((((((((((((((((.......)))))))))))...((((((............))))))))))).).................. ( -20.90)
>DroSim_CAF1 12854 95 + 1
UCUAUUACUUAUGAGUUGAAAUUGUA----CUAUUUGGGUACAGUUUAUUUGUGAGUACCUCUACCAUUUCUGACAACUGACUACACCAAUUUACCCAA
.....((((((..(((..((((((((----((.....)))))))))))))..))))))......................................... ( -17.50)
>DroEre_CAF1 18485 84 + 1
------------GUG-CGGAAUUGUACAUCGUAUUUGGGUACAGUUUAUUACUAAGUACCUCUACCAA--CUGACAACUGACUGCACCAAUUCAGCCAA
------------(((-(((..((((.....(((...(((((((((.....)))..)))))).)))...--...))))....))))))............ ( -17.50)
>DroYak_CAF1 6353 93 + 1
UAUAUUGCCUAGGUGUUGGAAUUGUACCU------AAAGUAUAGUUUAUUUUUAAGUACCUCUAGCAUUUCUGACAACUGACUACGCCAAUUCACCCAA
......((.(((((((((((...((((..------((((((.....))))))...)))).)))))))).((........))))).))............ ( -15.40)
>consensus
U_UAUU_CCUAUGAGUUGAAAUUGUACCU_CUAUUUGGGUACAGUUUAUUUCUAAGUACCUCUACCAUUUCUGACAACUGACUACACCAAUUUACCCAA
..................((((((............((((((.............))))))....((....))..............))))))...... ( -6.32 =  -5.84 +  -0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:02 2006