Locus 5731

Sequence ID X_DroMel_CAF1
Location 14,819,447 – 14,819,551
Length 104
Max. P 0.977644
window9299 window9300

overview

Window 9

Location 14,819,447 – 14,819,551
Length 104
Sequences 5
Columns 104
Reading direction forward
Mean pairwise identity 89.23
Mean single sequence MFE -27.06
Consensus MFE -22.36
Energy contribution -22.88
Covariance contribution 0.52
Combinations/Pair 1.08
Mean z-score -1.76
Structure conservation index 0.83
SVM decision value 0.96
SVM RNA-class probability 0.890863
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14819447 104 + 22224390
UUUGAACUGGUACCUGUAACAAAUUCAGCCAUAACAACCGCCAUUAGACGAUUCACGGACUGGAAGUGAUGGGCGCUAUACGUAUAUAUAAACAGGUACUUGUA
.....((.(((((((((...........((((.((..((.((..............))...))..)).))))(((.....)))........))))))))).)). ( -23.64)
>DroSec_CAF1 13405 104 + 1
UUUUAACUCGUACCUGUAACAAAUUCAGCCAUAACAACCGCCAUUAGGCGAUUCACGGACUGGAAGUGAUGGGCACUAUCCGUAUAUAUAAACAGGUACUUGUA
.....((..((((((((..((..(((((((........((((....))))......)).)))))..))(((((.....)))))........))))))))..)). ( -29.44)
>DroSim_CAF1 12611 104 + 1
UUUGAACUCGUACCUGUAACAAAUUCAGCCAUAACAACCGCCAUUAGGCGAUUCACGGACUGGAAGUGAUGGGCGCUAUCCGUAUAUAUAAACAGGUACUUGUA
.....((..((((((((..((..(((((((........((((....))))......)).)))))..))(((((.....)))))........))))))))..)). ( -29.44)
>DroEre_CAF1 18251 104 + 1
UUUGAACUCGUACCUGUAACAAAUUCAGCCAUAACAACCGCCAUUAGGCGACUCAGGGACUUGAAAUGAUGGGCGCUAUCCGUAUAUAUAAACAGGUACUUGAA
.........((((((((......(((((((........((((....))))......)).).))))...(((((.....)))))........))))))))..... ( -24.94)
>DroYak_CAF1 6135 95 + 1
UUUAAACUGGUACCUGUAACAAAUUCAGCCAUAACAACCGCCAUUAGACGACUCACGGAUGGGAAGUGUUGGGCGCUAUCCGGG-----GUACAGGUACU----
........((((((((((.(.......(((.(((((....(((((.((....))...)))))....))))))))........).-----.))))))))))---- ( -27.86)
>consensus
UUUGAACUCGUACCUGUAACAAAUUCAGCCAUAACAACCGCCAUUAGGCGAUUCACGGACUGGAAGUGAUGGGCGCUAUCCGUAUAUAUAAACAGGUACUUGUA
.........((((((((..((..(((((((........((((....))))......)).)))))..))(((((.....)))))........))))))))..... (-22.36 = -22.88 +   0.52)

alignment

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secondary structure

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dotplot

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Window 0

Location 14,819,447 – 14,819,551
Length 104
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 89.23
Mean single sequence MFE -29.50
Consensus MFE -24.84
Energy contribution -25.36
Covariance contribution 0.52
Combinations/Pair 1.08
Mean z-score -2.06
Structure conservation index 0.84
SVM decision value 1.80
SVM RNA-class probability 0.977644
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14819447 104 - 22224390
UACAAGUACCUGUUUAUAUAUACGUAUAGCGCCCAUCACUUCCAGUCCGUGAAUCGUCUAAUGGCGGUUGUUAUGGCUGAAUUUGUUACAGGUACCAGUUCAAA
.....((((((((((((((....)))))).............(((.((((((((((((....))))))..)))))))))........))))))))......... ( -27.70)
>DroSec_CAF1 13405 104 - 1
UACAAGUACCUGUUUAUAUAUACGGAUAGUGCCCAUCACUUCCAGUCCGUGAAUCGCCUAAUGGCGGUUGUUAUGGCUGAAUUUGUUACAGGUACGAGUUAAAA
.....((((((((..(((.....(((.((((.....)))))))((.((((((((((((....))))))..)))))))).....))).))))))))......... ( -34.00)
>DroSim_CAF1 12611 104 - 1
UACAAGUACCUGUUUAUAUAUACGGAUAGCGCCCAUCACUUCCAGUCCGUGAAUCGCCUAAUGGCGGUUGUUAUGGCUGAAUUUGUUACAGGUACGAGUUCAAA
.....((((((((..(((.....((.......))........(((.((((((((((((....))))))..)))))))))....))).))))))))......... ( -31.80)
>DroEre_CAF1 18251 104 - 1
UUCAAGUACCUGUUUAUAUAUACGGAUAGCGCCCAUCAUUUCAAGUCCCUGAGUCGCCUAAUGGCGGUUGUUAUGGCUGAAUUUGUUACAGGUACGAGUUCAAA
.....((((((((..(((.((.(((((((((.((.....((((......))))..(((....))))).))))))..))).)).))).))))))))......... ( -27.80)
>DroYak_CAF1 6135 95 - 1
----AGUACCUGUAC-----CCCGGAUAGCGCCCAACACUUCCCAUCCGUGAGUCGUCUAAUGGCGGUUGUUAUGGCUGAAUUUGUUACAGGUACCAGUUUAAA
----.(((((((((.-----...(((.((.(.....).)))))((.((((((.(((((....)))))...)))))).)).......)))))))))......... ( -26.20)
>consensus
UACAAGUACCUGUUUAUAUAUACGGAUAGCGCCCAUCACUUCCAGUCCGUGAAUCGCCUAAUGGCGGUUGUUAUGGCUGAAUUUGUUACAGGUACGAGUUCAAA
.....((((((((..........((.......))........(((.((((((((((((....))))))..)))))))))........))))))))......... (-24.84 = -25.36 +   0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:01 2006