| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 14,818,478 – 14,818,578 |
| Length | 100 |
| Max. P | 0.965141 |
| Location | 14,818,478 – 14,818,578 |
|---|---|
| Length | 100 |
| Sequences | 3 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 96.10 |
| Mean single sequence MFE | -26.11 |
| Consensus MFE | -26.11 |
| Energy contribution | -26.11 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.23 |
| Structure conservation index | 1.00 |
| SVM decision value | 1.58 |
| SVM RNA-class probability | 0.965141 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14818478 100 - 22224390 CCAAGCCAAUGAAUAUGUAUAAAAAUAUUCGCAUGCAACGGCUCGAUGGCUCUGCUGCCGUUGGAAAAUGGGAAAUGCAUAUUUAUGUGAUACACACAC--A-- ........((((((((((((.......(((.(((((....))((((((((......))))))))...))).)))))))))))))))(((.....)))..--.-- ( -26.11) >DroSim_CAF1 11648 102 - 1 CCAAGCCAAUGAAUAUGUAUAAAAAUAUUCGCAUGCAAUGGCUCGAUGGCUCUGCUGCCGUUGGAAAAUGGGAAAUGCAUAUUUAUGUGAUACACACAC--ACA ........((((((((((((.......(((.(((((....))((((((((......))))))))...))).)))))))))))))))(((.....)))..--... ( -26.11) >DroEre_CAF1 17342 102 - 1 CCAAGCCAAUGAAUAUGUAUAAAAAUAUUCGCAUGCAAUGGCUCGAUGGCUCUACUGCCGUUGGAAAAUGGGAAAUGCAUAUUUAUGUGAUACACACACACA-- ........((((((((((((.......(((.(((((....))((((((((......))))))))...))).)))))))))))))))(((.....))).....-- ( -26.11) >consensus CCAAGCCAAUGAAUAUGUAUAAAAAUAUUCGCAUGCAAUGGCUCGAUGGCUCUGCUGCCGUUGGAAAAUGGGAAAUGCAUAUUUAUGUGAUACACACAC__A__ ........((((((((((((.......(((.(((((....))((((((((......))))))))...))).)))))))))))))))(((.....)))....... (-26.11 = -26.11 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:00 2006